UFO03691.5prime Sequence
1131 bp (1032 high quality bases) assembled on 2009-02-04
> UFO03691.5prime
CAGTCGACATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGGATATAAAA
CAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTGGAAGCGCC
TAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCGTCATCAGG
ATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAAAAACCGCA
ATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACCTCCGGCAC
GGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCCAGCAGCCA
CCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTGGGTCGGCT
CCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCGCCCCTAGA
AAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAACGCTTTTG
TCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGTCGCCAGAG
CAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAACGCAACTCT
GGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGAGGAGGATG
AGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTGTCGGCCTG
GACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACAACGGGCTC
GGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCAGATCATGG
TGGACAGTCCGAAGGACCCGCCACGAGGCGATTTCAGCTCAGCACCGATT
GATGATGTGGGTGCGCCAATCGATGTGAATGTCCAGGGCGATACTTCGCA
GTGTTTTACGACTATAATCCTGAGAAAGCCACCGATGACCAAGGGAATGG
ACAGGACGAGACAGCGCAGTTCGAATCACTTCCAGACAGACAGAGAGCAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCAT
ATCATAATCATATCATAATCACACTAGCCTAAGGAGTCCTGGTCATGACT
AGTGCTGATTCTCACAATAAAAACGCCGGCGCCACGAGCGTTCTGAACAA
TTCAGAGTGGAGTTCTGGAGGTCTATACTGG
UFO03691.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RP | 11475 | CG34405-RP | 8413..9351 | 9..946 | 4670 | 99.9 | Plus |
NaCP60E-RO | 12475 | CG34405-RO | 9413..10351 | 9..946 | 4670 | 99.9 | Plus |
NaCP60E-RN | 12573 | CG34405-RN | 9511..10449 | 9..946 | 4670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24917648..24918141 | 454..946 | 2420 | 99.8 | Plus |
2R | 25286936 | 2R | 24917320..24917577 | 196..453 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24916771..24916890 | 76..195 | 600 | 100 | Plus |
2R | 25286936 | 2R | 24915395..24915462 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:36 has no hits.
UFO03691.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:35 Download gff for
UFO03691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RC | 7925..8869 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:44 Download gff for
UFO03691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10455 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:52 Download gff for
UFO03691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10455 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:52 Download gff for
UFO03691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24917320..24917577 | 196..453 | 100 | -> | Plus |
2R | 24915395..24915462 | 9..76 | 100 | -> | Plus |
2R | 24916772..24916890 | 77..195 | 100 | -> | Plus |
2R | 24917648..24918141 | 454..946 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:44 Download gff for
UFO03691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20802918..20802985 | 9..76 | 100 | -> | Plus |
arm_2R | 20804295..20804413 | 77..195 | 100 | -> | Plus |
arm_2R | 20804843..20805100 | 196..453 | 100 | -> | Plus |
arm_2R | 20805171..20805664 | 454..946 | 99 | == | Plus |