UFO03696.5prime Sequence
1005 bp (899 high quality bases) assembled on 2009-02-04
> UFO03696.5prime
CAGTCGACATGCCCCTCAATATAAGAAAAGTGCTGGTCTGCGATGCTGTG
GACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATTAAGGTTACCTA
CAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAAGAATTTCG
ACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGGAAGTTTTGGCC
GCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGGGCGGGTGTTGA
CAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGTTGTCCTGAACA
CTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGTGCATCCTAATT
GGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGCATGAAGGAGGG
TCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTATGGAAAAACCC
TGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCGCCATTCGGATG
AAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATCACCACGGAGGC
TGAGGCCAAGGCGGCGGGCATCGTGAAGATGACGCTGGAGGAGATTTGGC
CACTGGCGGACTACATAACCGTGCACACGCCGCTGATCCCAGCCACCAGA
AATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAGGGCGTTAAGGT
GGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGCCGTGCTCGATG
GCCTTGAGAGCGGAAAAGTGGCCGGCGCGGCCTTCGACGTTTATCCCGAG
GAGCCGCCAAAGTCTGCGGTCACCAGCCCTCATCAGTCATCCAAGTGGTG
CCACGCCGCATCTGGGCGCGAGCACTCGGAGCGCAGTCGTGTTGCGTGAG
TGGCGAACAGTTCATCGCCCTCATGACCTCGCGAGTACCCAGTATGCGGC
CGTATAACAGAAGCCTCGCAATACCAGCCAGCTTTCTAGACATTCGTTGC
GCGCG
UFO03696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6287-RA | 1284 | CG6287-RA | 121..1085 | 9..953 | 4300 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11152335..11152554 | 518..299 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 11151797..11152026 | 876..652 | 955 | 97.4 | Minus |
| 2L | 23513712 | 2L | 11153410..11153566 | 298..142 | 785 | 100 | Minus |
| 2L | 23513712 | 2L | 11152139..11152276 | 651..514 | 660 | 98.6 | Minus |
| 2L | 23513712 | 2L | 11155516..11155601 | 94..9 | 430 | 100 | Minus |
| 2L | 23513712 | 2L | 11155083..11155136 | 143..90 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:21 has no hits.
UFO03696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:44 Download gff for
UFO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6287-RA | 116..1063 | 9..938 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:23 Download gff for
UFO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6287-RA | 121..1068 | 9..938 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:29 Download gff for
UFO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6287-RA | 121..1068 | 9..938 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:29 Download gff for
UFO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11152335..11152554 | 299..518 | 100 | <- | Minus |
| 2L | 11153410..11153564 | 144..298 | 100 | <- | Minus |
| 2L | 11155083..11155133 | 93..143 | 100 | <- | Minus |
| 2L | 11155518..11155601 | 9..92 | 100 | | Minus |
| 2L | 11151722..11152026 | 652..938 | 93 | <- | Minus |
| 2L | 11152139..11152271 | 519..651 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:23 Download gff for
UFO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11151722..11152026 | 652..938 | 93 | <- | Minus |
| arm_2L | 11152139..11152271 | 519..651 | 99 | <- | Minus |
| arm_2L | 11152335..11152554 | 299..518 | 100 | <- | Minus |
| arm_2L | 11153410..11153564 | 144..298 | 100 | <- | Minus |
| arm_2L | 11155083..11155133 | 93..143 | 100 | <- | Minus |
| arm_2L | 11155518..11155601 | 9..92 | 100 | | Minus |
