UFO03701.5prime Sequence
1123 bp (1025 high quality bases) assembled on 2009-02-04
> UFO03701.5prime
CAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTCGTGTGTAT
CTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCACGCCACGCC
CGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGTCGAAACCT
TCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCACCTGCCGG
CGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAGCGGCGCGA
ATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGTGTGCTGCG
CCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGGCCTGCAAT
GAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTCTTCGTGTC
GGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTTCATGGCCG
CATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATCGATGCGGC
GGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCACTGTGCCGA
TTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGACAATCTAA
CCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCATCCATCCG
GATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTTGAGCTGGA
GACGGCGGCCAAGCCGGAACTGAAGCCCACTTGCATTTGGACGCAGAAGG
AGGTGACCAACACGCTGGTCACGGCCATTGGTTATGGGCAGACCAGCTTC
GCCGGTCTATCCTCCGCTCAGCTGCTAAAGGTGCCGCTGAAAAGCGTGAG
CAACGAGGAGTGCCAGCACCACTACCAAAAGGATCAGCTGGCTCAGGCGT
GCTGGGCACGCAGATGTGCGCCGGCGATATAACCGGCGAGCGGGACACCT
GCCAGGGCGATTCCGGCGGACCGCTGCTCATGCAGACGCCTGCTTGGCTA
TGGTGGGTGGGCATCACATCGCTGGGACAGGAATGGCGCCAGTGGACCGC
CCATCGTGTACACAGTGTCCAGCCTCCTCCACTGATCGAGGGCATTGGTG
GCCGGCGCACCAGGTACAGCCAC
UFO03701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spirit-RD | 1595 | CG2056-RD | 175..1286 | 9..1115 | 5190 | 98.4 | Plus |
| spirit-RC | 1546 | CG2056-RC | 126..1237 | 9..1115 | 5190 | 98.4 | Plus |
| spirit-RA | 1575 | CG2056-RA | 155..1266 | 9..1115 | 5190 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8571408..8571969 | 1115..559 | 2220 | 95.8 | Minus |
| X | 23542271 | X | 8572459..8572715 | 342..86 | 1285 | 100 | Minus |
| X | 23542271 | X | 8572091..8572308 | 559..342 | 1090 | 100 | Minus |
| X | 23542271 | X | 8572828..8572906 | 87..9 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:02 has no hits.
UFO03701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:25 Download gff for
UFO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spirit-RA | 152..1273 | 2..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:18 Download gff for
UFO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spirit-RA | 152..1273 | 2..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:48 Download gff for
UFO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spirit-RA | 152..1273 | 2..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:48 Download gff for
UFO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8572459..8572713 | 88..342 | 100 | <- | Minus |
| X | 8572828..8572909 | 2..87 | 95 | | Minus |
| X | 8572091..8572307 | 343..559 | 100 | <- | Minus |
| X | 8571397..8571968 | 560..1123 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:18 Download gff for
UFO03701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8465430..8466001 | 560..1123 | 96 | <- | Minus |
| arm_X | 8466124..8466340 | 343..559 | 100 | <- | Minus |
| arm_X | 8466492..8466746 | 88..342 | 100 | <- | Minus |
| arm_X | 8466861..8466942 | 2..87 | 95 | | Minus |
