UFO03702.5prime Sequence
1117 bp (903 high quality bases) assembled on 2009-02-04
> UFO03702.5prime
CAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGCTGGAGGTC
TGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGCGGAGCTTC
ACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGACACCCAGCA
TCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCATTTACTGC
ATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGACGAGGAGAT
GTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGGTGCCGATG
GCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACGTGGATCAG
TGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACCTTTCACCG
CGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGTCGACATGT
TGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCCGACCCACG
GCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAACATCAAAG
AGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAACCTGGAGG
AGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCGCCCTGGAC
ACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATGGAGTGTGA
CGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAACCAACTCCA
TCGTGTGCGAAGATGGTTACATTGCGAAGCGTGAGTCCCGCGCAGCTTCT
AGACATCGTTGCGCGCGGCCAGTAGTGTCTATCTATCTATCTATCTATCA
CACTAGCTAGAGTCTGTCTGATATGTGATCCACATAAAACCCGCGCACGA
CGTCGACATCGATGAGTCGAGCTATGATTTAAGATCAGGACCAATCATCG
CCGCTGCTCTGAGATGTGATCTACTCGCAATGACTCAACGTGGACGATCC
AGGCCGCTGCTGGTAATGCTGGAACGGGAAATGCATGCGTAACATGAACC
GTGGAAAATTCAACTAGAGCGTCGACCATCGATGATCGATCGTCAGGAAT
CTCGAGTAGACACCTGA
UFO03702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6136-RD | 2071 | CG6136-RD | 400..1188 | 9..791 | 3795 | 99.2 | Plus |
| CG6136-RC | 2177 | CG6136-RC | 400..1188 | 9..791 | 3795 | 99.2 | Plus |
| CG6136-RB | 1398 | CG6136-RB | 400..1188 | 9..791 | 3795 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15371067..15371813 | 755..9 | 3735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:14:56 has no hits.
UFO03702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:24 Download gff for
UFO03702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6136-RA | 359..1152 | 1..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:52 Download gff for
UFO03702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6136-RB | 395..1188 | 1..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:38 Download gff for
UFO03702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6136-RB | 395..1188 | 1..791 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:38 Download gff for
UFO03702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15371025..15371817 | 1..791 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:52 Download gff for
UFO03702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11196747..11197539 | 1..791 | 98 | | Minus |
