UFO03706.5prime Sequence
1117 bp (992 high quality bases) assembled on 2009-02-04
> UFO03706.5prime
CAGTCGACATGTCGCAGTTCAATTTTGTGAGCGATTTGCAGAATGCTCTC
ATCATGGACGGCGAGACGCGCGGACCTGCGCCCAGGTGGAAGAAGAAGCT
GGAGGCGTCTCTAAATGGAAGTGTGAATACCACTCGGTCGGTGCTATCCG
TCTCGTACAACACCAGTTTCTCGGGTGTCCAGGCGCCCACGAAAACTCCG
GGCAAGAGCAGCGAGGGCAAGACCAAGAAGTCCAACACCACGCCCTCTAA
GACGCCAGGAGGCGGAGATCGCTTTATTCCGAATCGGGCGGCTACCAACT
TTGAGTTAGCACACTTTCTGGTGAACAAAGACTCCGGCGATAAGTCCGAT
GAGGAGAACGACAAGGCCACCTCGAGCAACAGCAACGAGAGCAATGTCCA
GGCTTCGGCTCACAAGGGCGACCGGCAGAAACTCATCTCTGAAGTGGCCC
AGGTCGGTGACTCCAAGGGCGGGCGCATTTTGTGCTACCAAAACAAGGCT
CCCGCTGCTCCAGAAACACACAACAATCCCCTGAAGGTCGTGTACTCCAT
TAAGACACCCATATCCACAAAGAGTGGCTCACGCTATATACCCACCACAT
CCGAGAGGATTCTGGATGCACCTGATTTTATTAACGATTACTATTTAAAT
CTTATGGATTGGAGTGCCGACAATATAGTGGCTGTGGCCTTGGGCAGTTG
CGTCTATTTGTGGAACGCACAGACCGGAAATATCGAGCAGCTTACGGAGT
TTGAGGAGGGCGACTACGCAGGCTCGCTATCGTGGATCCAGGAGGGGCAG
ATACTTGCCATCGGCAACAGCACCGGTGCCGTGGAGCTGTGGGACTGCTC
CAAAGTGAAGCGTCTGCGAGTGATGGATGGACACAGTGCCCGAGTGGGAT
CCTTGGCCTGCAACTCATTCCTGGTTTCCTCTGGCAGCCGGGATGGCACA
TGTCCACCACGATGTGCGTGCACGTGAGCACAAGCTTCCACATGTCGAAA
CACCGCAGGAGGTTGCGGCTAAAGTGTCCACGATTTCAAGTATTTGCTAG
CCGAGCAACGACATCTGTGAAAGTTGTCGCGGCACGGTGCTGGGACTGCC
ACGAATCTGCAATTCAG
UFO03706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzy-RA | 1996 | CG4274-RA | 146..1225 | 9..1075 | 4985 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16311881..16312227 | 643..987 | 1640 | 98.8 | Plus |
| 2L | 23513712 | 2L | 16311505..16311827 | 320..642 | 1615 | 100 | Plus |
| 2L | 23513712 | 2L | 16311101..16311414 | 9..322 | 1570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:05:58 has no hits.
UFO03706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:13 Download gff for
UFO03706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 169..1248 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:20 Download gff for
UFO03706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 142..1221 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:28 Download gff for
UFO03706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 142..1221 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:28 Download gff for
UFO03706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16311097..16311412 | 1..320 | 98 | -> | Plus |
| 2L | 16311506..16311827 | 321..642 | 100 | -> | Plus |
| 2L | 16311881..16312322 | 643..1071 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:20 Download gff for
UFO03706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16311097..16311412 | 1..320 | 98 | -> | Plus |
| arm_2L | 16311506..16311827 | 321..642 | 100 | -> | Plus |
| arm_2L | 16311881..16312322 | 643..1071 | 95 | | Plus |
