UFO03708.5prime Sequence
1089 bp (998 high quality bases) assembled on 2009-02-04
> UFO03708.5prime
CAGTCGACATGAAATTCTTCAACCTGCTGTTTAGCCTCTGTCTGGCCTTC
ATGCTGTGCACCTCGTGGGTGTCGGCTTTCTCCAGTCTTGCCACCCCGGA
GCCAACTCCGCCAACTGGTGCTCCCGTCGATGGTACGACTAGCACGGGAT
TCTCTGGTCCGCCGCAGGCTGAGACCACAAATGCCACGCCAGAAACGTCG
ACCATCTATCCCATTTACGGAGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCA
GAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGT
GAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAAT
TCGGATGAGCATTCATCAGCGGGCAGATGTGATAAAGGCCGGATAACTGT
GCTTATTTTTCTTTACGTCTTTAAAAGCGTATATCCAGCTGACGTCTGGT
ATAGTACATGAGCACTGACTGAATGTCTCAAATGTTCTTAGATGGCAATG
GGATATATCACGGTGATTCATGATTTTTCTCATTAGCTC
UFO03708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14302-RA | 281 | CG14302-RA | 20..238 | 3..221 | 1080 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18732786..18732991 | 16..221 | 1030 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 790..857 | 123 | 68.1 | Plus |
UFO03708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:12 Download gff for
UFO03708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14302-RA | 1..218 | 4..221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:32 Download gff for
UFO03708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14302-RA | 1..218 | 4..221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:44 Download gff for
UFO03708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14302-RA | 18..238 | 1..221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:09:44 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:32:32 has no hits.
