UFO03709.5prime Sequence
1150 bp (1045 high quality bases) assembled on 2009-02-04
> UFO03709.5prime
CAGTCGACATGAAAGCAGCTTTAGTCCTTCTCTTCCTGACCCTCTGCGTT
GCCATCTACGCCGACCTTGACTGCAATCCCGATGGCAATGGTGAGCCCGA
TTGCGTGGGACGCTCCGGAGAGATTTCCCGTGACTTCTGGGATCCAACCC
ACTACTGGCAGTGCTCTAGCACCGGACAGGCCGAGCTAGTTGCCTGCGAG
CAGAACACTGGATTCGATCCGAAAACTGGAAGCTGCGTCGATTGGAGCGT
TTGGCAGTGGTATCCTCCATGTTCCGAAGCATCCACTGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACC
GTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGT
CGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAA
ACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACGTCTTTC
ATTGCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAAATGGTGAAT
AAAGGCCGGATAACTTGTGCTTATTTTTCTTTACGTTCTTTAAAAGGCGG
TAATATCAGCTGACGATTGTTATAGTACATTTGGACACTGACTGAATGCC
TCAATGTTCTTTACAATGCCATGAATTATCACGTGAATTCCAGGGATTTT
UFO03709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Peritrophin-15b-RC | 428 | CG31893-RC | 60..338 | 9..287 | 1395 | 100 | Plus |
| Peritrophin-15b-RA | 337 | CG31893-RA | 33..311 | 9..287 | 1395 | 100 | Plus |
| Peritrophin-15b-RB | 331 | CG31893-RB | 41..305 | 23..287 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8394536..8394807 | 287..16 | 1360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 856..923 | 123 | 68.1 | Plus |
UFO03709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:11 Download gff for
UFO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-15b-RA | 1..282 | 9..291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:09 Download gff for
UFO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-15b-RA | 19..311 | 1..293 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:03 Download gff for
UFO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-15b-RA | 24..316 | 1..293 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:03 Download gff for
UFO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8394536..8394812 | 10..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:09 Download gff for
UFO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8394536..8394812 | 10..287 | 98 | | Minus |
