UFO03710.5prime Sequence
1101 bp (990 high quality bases) assembled on 2009-02-04
> UFO03710.5prime
CAGTCGACATGCGTCTAACTAACGTTTTGTTCAAAAAGGTGAAGAGCAAG
CGCATCATGGTCGTACTGGAAAGTGTGGTCAGTGGACATCAGTTTAATGC
TTTTCGCGATCGCTTGGCCGACAAATTGGAGATAATACGCTTCGATCCGT
ACATTCAACAGGAAAGCCTTTATCGTGAACGCAAGAAAATCCGCAGCGCC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGG
CCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAAC
TGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTT
TGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAG
CTCACCGTCTTTCATTGCCATACGAAATTCCCGGATGAGCATTCATCAGG
GGGCAAGAATGTGAATAAAGGGCCGGATAAACTTGTGCTTATTTTTCTTT
ACGGTCTTTAAAAGGCCGTATATCCAGCTGAACGTCTGGTTATTAGGTAC
ATTGACAACTGACTGAAATGCCTTAAAATGTTCCTTTACGATGCATTGGA
TATATTCAACGGGGTTAATCCAGTGAATTTTTTTCTCCATTTTAGCTTCT
T
UFO03710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL33-RA | 349 | CG3712-RA | 101..292 | 9..200 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4321931..4322034 | 153..50 | 520 | 100 | Minus |
| X | 23542271 | X | 4321821..4321867 | 200..154 | 235 | 100 | Minus |
| X | 23542271 | X | 4322090..4322131 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 768..835 | 123 | 68.1 | Plus |
UFO03710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:30 Download gff for
UFO03710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL33-RA | 62..266 | 1..205 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:39 Download gff for
UFO03710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL33-RA | 92..296 | 1..205 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:26 Download gff for
UFO03710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL33-RA | 92..296 | 1..205 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:26 Download gff for
UFO03710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4321821..4321867 | 154..200 | 100 | <- | Minus |
| X | 4321931..4322034 | 50..153 | 100 | <- | Minus |
| X | 4322091..4322137 | 1..49 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:39 Download gff for
UFO03710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4215854..4215900 | 154..200 | 100 | <- | Minus |
| arm_X | 4215964..4216067 | 50..153 | 100 | <- | Minus |
| arm_X | 4216124..4216170 | 1..49 | 91 | | Minus |
