UFO03711.5prime Sequence
1151 bp (860 high quality bases) assembled on 2009-02-04
> UFO03711.5prime
CAGTCGACATGTCTGGACGCGAGGGCGGTAAGAAGAAGCCTCTGAAGGCG
CCGAAGAAGGACTCCAAAGACCTGGACGAGGACGACATGGCCTTCAAGCA
AAAGCAGAAGGAGCAGCAGAAGGCTCTGGAGGCGGCCAAGGCGAACGCCT
CAAAGAAGGGTCCTCTCGTAGGAGGCGGCATCAAGAAGTCGGGAAAGAAG
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ACTTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAG
GCCAGGTTTTCACCGTAACACGCCACATCTTTGCGAATATATGTGTAGAA
AACTGCTGGGAAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAACGT
TTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGGTGAACACTATCCCA
TTATCACCAGCTCACCGTTCTTTTCATTGCCATACGAAATTTCCGGGATG
AGCATTTCATCAGGGCGGGCAAGATGTGAATAAAGGCCGGCATAAAACTT
GGTGCTTATTTTTTTCTTTACGGGTCTTTTAAAAGGGCCGTAATATCCAG
CCTGAACCGGTCCTGGCTTAATAGGGTACTTGGAGCAACTGGACTGGAAT
GGCCTCCAAATTGTTTCTTTTACCAGTGCCATTGGGAATATATTCCAACG
GGTGGTATATCCCGTGTGATTTTTTTTCCTCCATTTTTAGCCTTTCCTTA
G
UFO03711.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13364-RA | 387 | CG13364-RA | 54..252 | 9..207 | 965 | 99 | Plus |
| CG16824-RA | 407 | CG16824-RA | 71..262 | 9..200 | 555 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 624892..625090 | 207..9 | 965 | 99 | Minus |
| 2L | 23513712 | 2L | 13293079..13293270 | 9..200 | 555 | 85.9 | Plus |
Blast to na_te.dros performed 2014-11-28 23:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 774..833 | 132 | 73.3 | Plus |
UFO03711.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:28 Download gff for
UFO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13364-RA | 45..250 | 2..207 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:36 Download gff for
UFO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13364-RA | 47..252 | 2..207 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:33 Download gff for
UFO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13364-RA | 47..252 | 2..207 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:03:33 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:03:36 has no hits.
