UFO03712.5prime Sequence
1089 bp (993 high quality bases) assembled on 2009-02-04
> UFO03712.5prime
CAGTCGACATGGACAAGGTTGTCAAATTCGCCGAACCCGGACGCGCCTTC
GCCAAGGACTCAATCCGCCTGGTGAAGCGCTGCACAAAACCCGACCGCAA
GGAGTTCCAGAAAATCGCCATCGCCACCGCCGTGGGCTTCGCCATCATGG
GCTTCATCGGCTTCTTCGTCAAGCTGATTCACATTCCCATTAACAACATC
ATCGTGGGATCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACG
GGGGCGAAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCT
TTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATA
TATGTGTAGAAACTGCCCGGAAATCGTCGTGGTATTCACTCCAGAGCGAT
GAAAACGTTTCAGTTTGCTCATGGGAAACGGTGTAACAAGGGTGAACCAC
TATCCCATATCACCAGCTCACCGTCTTTCATTGCCAATACGAAATTTCGG
GATGAGCATTCATCAGGCGGGCAGGAATGTGAATAACGCCGGATAAACTT
GTGCTTATTTTTTCTTTACCGTCTTTAAAAAGGCCGTAATATCCAGCTGA
ACCGGCCTGGTATAGGTACATTGAGCACTGACTGAATGCCTCCAAATGTT
CTAACGATTCCCATTGGGATTTATCAACGGTGGTAATAT
UFO03712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8860-RA | 420 | CG8860-RA | 110..313 | 9..212 | 1020 | 100 | Plus |
| Sec61gamma-RC | 537 | CG14214-RC | 26..228 | 6..208 | 700 | 89.7 | Plus |
| Sec61gamma-RB | 792 | CG14214-RB | 158..360 | 6..208 | 700 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12179590..12179793 | 212..9 | 1020 | 100 | Minus |
| X | 23542271 | X | 19643884..19644086 | 6..208 | 700 | 89.7 | Plus |
| 2R | 25286936 | 2R | 20512745..20512877 | 207..75 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:29 has no hits.
UFO03712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:26 Download gff for
UFO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8860-RA | 46..257 | 9..218 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:40 Download gff for
UFO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8860-RA | 110..321 | 9..218 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:48 Download gff for
UFO03712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8860-RA | 110..321 | 9..218 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:04:48 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:15:40 has no hits.
