UFO03714.5prime Sequence
1161 bp (1018 high quality bases) assembled on 2009-02-04
> UFO03714.5prime
CAGTCGACATGCTTAAGATTCCAAATCGGCGCAAGATGCCTGTGTCAGAG
CAACAGCCTCGAGTCATCAAGATAGAGCGACCAACGACTGGAAGGATACT
AGGTCCTTTGAACGTGGCCAGCATGCAGCAGCAGAACTTCTTGGCCAAGA
ACAACCCAAAAATATCCGAAGATCTGGGCAGTCGCTTGCAGACTCTGCAG
AGACGTGTCCAAGAGTGGAAGTCTTCAGGCCAAGTCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCG
TGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAAC
GGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCA
TTGCCATACGAAATTCCAGATGAGCATTCATCAAGCGGGCAAGATGTGAA
TAAAGGCGGATAAAACTTGTGCTATTTTTCTTAACGGTCTTTAAAAGCGT
ATATCAGCTGACCGTCTGGTAATAGGTACATGAGCACTGACTGAAATGCC
TCAAATGTTCTTACGATGGCATGGAATTATCACGGTGAATCAGTGATTTT
TCTCCCATTTAGCTTCTAGTCTGAAGATCCTAACTTCGTAGGCTACATTA
TCGAAGGATTA
UFO03714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8750-RB | 641 | CG8750-RB | 128..355 | 9..236 | 1140 | 100 | Plus |
| CG8750-RA | 452 | CG8750-RA | 128..355 | 9..236 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13842663..13842890 | 236..9 | 1140 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 804..871 | 123 | 68.1 | Plus |
UFO03714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:07 Download gff for
UFO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8750-RA | 128..355 | 9..236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:50 Download gff for
UFO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8750-RA | 128..355 | 9..236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:22 Download gff for
UFO03714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8750-RA | 128..355 | 9..236 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:46:22 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:31:50 has no hits.
