UFO03716.5prime Sequence
1191 bp (1051 high quality bases) assembled on 2009-02-04
> UFO03716.5prime
CAGTCGACATGCAATTGACAAGTATTATCTGCGTCATCTTGTTCCTTGGC
TGTGTACTTATTAATGGACAAAGTCCCGACTGCCGAAAGTTAAGGGACAC
TTGCAATCCTTGCATCCGAAGACTCAATAATCCCATCAATAATGTGGAGT
TCATGAACGAGGGATGCCGTGAGAAAGTCCGTGGCAGATACATCTGGAAG
AATCAGACTCGCTGCGATCTTCAAGTGATCGCTTGCAGTGCTCACAAGAG
GAAACTGGATTGCTTGGTAATAGCCGAGCTTGCTGGGATGCCAAGGCGAA
CTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAG
GGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATA
GGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAA
ACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCA
GTTTGCTCATGGAAAACGGTGTAACAGGGTGAACACTATCCCATATCACC
AGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAG
GCGGGCAGGATGTGAATAAGGCCGGATAAAACTTGTGCTATTTTCTTACG
TCTTTAAAAGGCCGTAATATCCAGCTGACGTTGGTTATAGGTACATGGAG
CACCTGACTGAAATGCCTCAATGTTCTTAACAGTGCATTGGGAATATTCA
ACGGGGATATCCAGGAACTTTTTCCCATTAGCCTTCCTTAG
UFO03716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eig71Ef-RA | 420 | CG7599-RA | 34..327 | 9..302 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15657126..15657357 | 240..9 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 15656748..15656810 | 302..240 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 871..928 | 127 | 72.9 | Plus |
UFO03716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:06 Download gff for
UFO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ef-RA | 45..338 | 9..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:24 Download gff for
UFO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ef-RA | 34..327 | 9..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:25 Download gff for
UFO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ef-RA | 34..327 | 9..302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:25 Download gff for
UFO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15656748..15656809 | 241..302 | 100 | <- | Minus |
| 3L | 15657126..15657357 | 9..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:24 Download gff for
UFO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15649848..15649909 | 241..302 | 100 | <- | Minus |
| arm_3L | 15650226..15650457 | 9..240 | 100 | | Minus |
