UFO03718.5prime Sequence
1169 bp (1056 high quality bases) assembled on 2009-02-04
> UFO03718.5prime
CAGTCGACATGTTCCAAAACAGCGCTGCCCGCCTCCTGGTCCCCGCTATG
CGTAGCGCCATGCAGAGCCGTTGCCAGTCGGTCGTCTCTGGACCTCCGAC
CCAGCGCATCTCCACCGCCGAGAAGGTGATCCTCGGCGGCGGCATGTGCG
CTGCATCCTTGTTCATTCCCGCCTGGGTGCTCTACCACATCCGGGACTAC
AAGGGCGACAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACG
GGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAA
ACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATAT
ATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGA
AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTAT
CCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGA
GCATTCATCAGCGGGCAAGAATGTGAATAAAGGCCGGATAAACTTGTGCT
TATTTTTCTTTACGGTCTTTAAAAGGCCGTATATCCAGCTGACGTCTGGT
TATAGGTACATTGAGCACTGACTGAAATGCTCAATGTTCTTTACGATGCC
ATTGGGATAATTCACGGTGTATATCCAGGTGATTTTTTTTCTCTCAATTA
GCTTCTAGCTCTGAAGATCCTAACTTCGAAGGCATACTTATCGAGATTAG
ATTCAATTATATGGAGCCA
UFO03718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIII-RA | 406 | CG7181-RA | 94..297 | 9..212 | 1020 | 100 | Plus |
| CoVIII-RB | 513 | CG7181-RB | 94..297 | 9..212 | 1020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21539243..21539354 | 120..9 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 21539075..21539167 | 212..120 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 781..848 | 123 | 68.1 | Plus |
UFO03718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:04 Download gff for
UFO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-RA | 88..303 | 3..219 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:11 Download gff for
UFO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 88..303 | 3..219 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:22 Download gff for
UFO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 88..303 | 3..219 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:22 Download gff for
UFO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21539075..21539167 | 120..212 | 100 | <- | Minus |
| 3L | 21539244..21539360 | 3..119 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:11 Download gff for
UFO03718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21532175..21532267 | 120..212 | 100 | <- | Minus |
| arm_3L | 21532344..21532460 | 3..119 | 97 | | Minus |
