UFO03719.5prime Sequence
1150 bp (1035 high quality bases) assembled on 2009-02-04
> UFO03719.5prime
CAGTCGACATGCGTTTCGCTCTGTTTGCTTTTCTAGCACTGTGCTTGCTG
GCATTCGTCCTGGCTACTCCGGCCAAGGACACCAAGAAGCCGGCCACCAA
CAGTTGCCAGCACAACTGCGGTGAAGTCTACGAGCCCGTTTGTGCCAAGG
CCAAAAACAGCAGCAAGGAGCGCCTCCTCACCTTTGGCAGCCCGTGCGTC
ATGGCCAACTACAACTGCCAGCATGCCGACGATCCATTCGAGCAGAAGTC
CAAGGGCGAGTGCGGCGGTGGAGTGAGCGTTCGCCTGTCCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAG
ACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTC
ACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAAT
CGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGA
AAACGGTGTAACAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTT
TCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAAGATGTG
ATTAAGGCCGGATAAACTGTGCTATTTTTCTTTACGTCTTTAAAAGCGTA
ATTCAGCTGACGTCTGATATAGGTACATGAGCACTGACTGAAATGCCTCA
ATGTTCTTACATGCCATGGATATTCACGTGAATCAGGATTTCTCTCCATT
UFO03719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8369-RA | 431 | CG8369-RA | 91..372 | 9..290 | 1410 | 100 | Plus |
| CG8369-RC | 774 | CG8369-RC | 459..715 | 34..290 | 1285 | 100 | Plus |
| CG8369-RB | 479 | CG8369-RB | 166..420 | 36..290 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8822466..8822666 | 34..234 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 8822724..8822779 | 235..290 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..289 | 856..915 | 128 | 72.1 | Plus |
UFO03719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:03 Download gff for
UFO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8369-RA | 72..361 | 1..290 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:48 Download gff for
UFO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8369-RA | 83..372 | 1..290 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:20 Download gff for
UFO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8369-RA | 83..372 | 1..290 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:20 Download gff for
UFO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8822724..8822779 | 235..290 | 100 | == | Plus |
| 3R | 8822469..8822666 | 37..234 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:48 Download gff for
UFO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4648191..4648388 | 37..234 | 100 | -> | Plus |
| arm_3R | 4648446..4648501 | 235..290 | 100 | == | Plus |
