UFO03720.5prime Sequence
1135 bp (1042 high quality bases) assembled on 2009-02-04
> UFO03720.5prime
CAGTCGACATGCCACAGGGAAAATTCAAGAAGGCCAAGCTACCAGCAGCG
ATACAGAAAAAGAAGAACCAAAAGCAAGCTGCTTTCACCCGTCGATCAAA
TGCGCCCATTCAGGCGAAAAAGGCCAAGTTCAATGAGACGCAGAAGATCA
AGTCCGTCATTTCGAAGTCGGTCAACAAGAGCGTGGAGAGCGAACTGCGC
TCCCGCGCCCACGAGGGCTACATCCAGTTGAGCAAGGCCCAGGAGGCGGT
GGCCAAGCACCACGCCTCCCAGGCGAAGGCGGCTGCGGCGGCCAGTACCG
CCAAGTCCGCGGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATG
AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGTGACACTATCC
CATATCACCAGCTCACGTCTTTCATTGCCATACGAAATTCGATGAGCATC
ATCAGCGGCAGATGTGATAAGCCGATAACTTGTGCTTATTTTTCCTACGT
CTTAAGCGTAAATCAGCTGACGGTTGGTTAGGTACTGAGCACTGAACTGA
ATGCCTAAGTTCTCCAACGTCCATTGTATATCACC
UFO03720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11279-RC | 1880 | CG11279-RC | 105..410 | 9..314 | 1500 | 99.3 | Plus |
| CG11279-RB | 927 | CG11279-RB | 105..410 | 9..314 | 1500 | 99.3 | Plus |
| CG11279-RA | 452 | CG11279-RA | 71..376 | 9..314 | 1500 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13047235..13047449 | 100..314 | 1045 | 99.1 | Plus |
| 3L | 28110227 | 3L | 13047081..13047171 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:30 has no hits.
UFO03720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:00 Download gff for
UFO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11279-RA | 52..372 | 3..325 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:46 Download gff for
UFO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11279-RA | 65..385 | 3..325 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:18 Download gff for
UFO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11279-RA | 65..385 | 3..325 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:18 Download gff for
UFO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13047075..13047171 | 3..99 | 96 | -> | Plus |
| 3L | 13047235..13047449 | 100..314 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:46 Download gff for
UFO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13040175..13040271 | 3..99 | 96 | -> | Plus |
| arm_3L | 13040335..13040549 | 100..314 | 99 | == | Plus |
