UFO03721.5prime Sequence
1147 bp (1002 high quality bases) assembled on 2009-02-04
> UFO03721.5prime
CAGTCGACATGAAAATCTGTGGCCCGAAACTATCACTTTGTGGTCTTATT
ATCTCTGTTTGGGGTATTGTCCAATTGGTTTTAATGGGTCTATTCTTCTA
CATAAATAGTGTAGCCCTCATTGAGGACTTACCTCTTGAGGAGGAATACC
ATTCGTTGGAAGATTTTTATGCAGCTGCAAATAGAGCATACAATCAGAAT
GCCTACAACTGCTGGATTGCCGCATGTATATATGTTTTGACTTTGTTGCT
CTCCGCCCAGCAATTTTACATGAATAGCAGAGTAACTGCCAACGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACGCCCACATCTGCGAATATATGTGTAGAAACTGCCGGAA
ATCGTCGTGGTATTCACTTCCAGAGCGATGAAAACGGTTTCAGTTTGCCT
CATGGAAAACGGGTGTAACAAGGGTGACACCTAATCCCATATCACCAGCC
TCACCGTCTTTCATTGCCATACGAAATTCCGGGAAGGAGCATTCATCAGG
CGGCAAGAATGTGAATAAGGCCGGAAATAAACTTGGTGCTTATTTTTTCT
TACGGTCTTTAAAAGGGCGTATATTCCAGACTGGACGTCCTGGTTATATG
GTAATTGACCACCTGACTGAATGGCCTCAATGTTCTCTTTACGATGC
UFO03721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40127-RA | 505 | CG40127-RA | 114..398 | 9..293 | 1425 | 100 | Plus |
| CG40127-RB | 1160 | CG40127-RB | 114..398 | 9..293 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4187760..4187880 | 197..77 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 4187597..4187696 | 293..194 | 500 | 100 | Minus |
| 2R | 25286936 | 2R | 4187944..4188014 | 79..9 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:30 has no hits.
UFO03721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:59 Download gff for
UFO03721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40127-RA | 138..436 | 2..303 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:17 Download gff for
UFO03721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40127-RB | 109..407 | 2..303 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:26 Download gff for
UFO03721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40127-RB | 109..398 | 2..293 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:26 Download gff for
UFO03721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4187597..4187692 | 198..293 | 100 | <- | Minus |
| 2R | 4187760..4187879 | 78..197 | 100 | <- | Minus |
| 2R | 4187946..4188019 | 2..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:17 Download gff for
UFO03721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 75102..75197 | 198..293 | 100 | <- | Minus |
| arm_2R | 75265..75384 | 78..197 | 100 | <- | Minus |
| arm_2R | 75451..75524 | 2..77 | 94 | | Minus |
