UFO03722.5prime Sequence
1139 bp (1046 high quality bases) assembled on 2009-02-04
> UFO03722.5prime
CAGTCGACATGTCGTTCAAAGGAAATCCCAAGGTGCAGAAGGTGATGGTG
CAGCCCATCAACCTGATCTTCCGTTACCTGCAGAACCGGTCCCGCGTGCA
AGTTTGGTTATACGAGAACATATCGCTGCGCATCGAGGGCCACATTGTGG
GATTCGATGAGTACATGAATCTGGTGCTGGACGACGCCGAGGAAGTCTAT
GTGAAGACCCGGCAGCGCCGCAACCTCGGGAGGATCATGCTCAAGGGCGA
CAACATCACGCTCATACAGAACGTCAGTCCCACGAAGGACGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAG
ACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTC
ACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAAT
CGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGG
AAAACGTGTAACAGGGTGAACACTATCCCATATCACCAGCTCACGTCTTT
CATTGCAATACGAAATTCCGGATGAGCATTCATCAGCGGGCAGATGTGAA
TAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAGC
GTTACATCAGCTGAACGGTCTTGTTAATAGTACATTGGAGCACTGACTGA
ATGCCTCAAACTTCTTTACGATGCCATGGATATTCAACG
UFO03722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmE-RA | 521 | CG18591-RA | 108..389 | 9..290 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7885062..7885343 | 290..9 | 1410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 6604..6668 | 1077..1011 | 113 | 67.2 | Minus |
UFO03722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:10 Download gff for
UFO03722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-RA | 75..369 | 1..296 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:08 Download gff for
UFO03722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 100..394 | 1..296 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:27 Download gff for
UFO03722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 100..394 | 1..296 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:27 Download gff for
UFO03722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7885062..7885351 | 1..290 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:08 Download gff for
UFO03722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7885062..7885351 | 1..290 | 98 | | Minus |
