UFO03724.5prime Sequence
1116 bp (1035 high quality bases) assembled on 2009-02-04
> UFO03724.5prime
CAGTCGACATGTTCAAGATCCTGCTTGTCTGTTCTCTCGCCGCCCTGGTG
GCCGCCAACGCTAATGTGGAGGTCAAGGAGCTGGTCAACGATGTCCAGCC
CGATGGCTTTGTCAGCAAGTTGGTCCTCGACGACGGATCTGCCTCCTCCG
CCACCGGAGACATCCACGGCAACATCGACGGAGTCTTCGAGTGGATCTCC
CCCGAGGGTGTCCATGTGCGAGTGAGCTACAAGGCTGACGAGAACGGATA
CCAGCCCCAGAGTGACCTGCTGCCCACTCCTCCTCCGATCCCAGCTGCCA
TCCTGAAGGCTATCGCCTACATCGAGGCTAACCCCAGCAAGAACGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGT
TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGG
AAATCGTCGTGGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCA
TGGAAAACGTGTAACAAGGTGACACTATCCCATATCACAGCTCACGTCTT
TCATGCATACGAAATTCGATGAGCATTCATCAGCGGCAGAATGTGATACG
CGATAAACTGTGCTATTTTTCTACGTCTTAAAAGCCGTATATCAGCTGAA
CGGCTGGGTAAGGTAC
UFO03724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp3-RB | 730 | CG2043-RB | 180..515 | 9..344 | 1680 | 100 | Plus |
| Lcp3-RA | 513 | CG2043-RA | 47..382 | 9..344 | 1680 | 100 | Plus |
| Lcp4-RB | 527 | CG2044-RB | 43..382 | 2..341 | 995 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8435557..8435880 | 21..344 | 1620 | 100 | Plus |
| 2R | 25286936 | 2R | 8437765..8438085 | 21..341 | 930 | 86 | Plus |
| 3L | 28110227 | 3L | 10890454..10890525 | 233..304 | 240 | 88.9 | Plus |
| 3L | 28110227 | 3L | 10892254..10892325 | 233..304 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:57 has no hits.
UFO03724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:09 Download gff for
UFO03724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp3-RA | 37..385 | 1..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:10 Download gff for
UFO03724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp3-RA | 38..386 | 1..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:31 Download gff for
UFO03724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp3-RA | 38..386 | 1..349 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:31 Download gff for
UFO03724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8435557..8435880 | 21..344 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:10 Download gff for
UFO03724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4323062..4323385 | 21..344 | 100 | == | Plus |
