UFO03727.5prime Sequence
1146 bp (1016 high quality bases) assembled on 2009-02-04
> UFO03727.5prime
CAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCAAACTCGGC
CTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGCCACTCCAG
CTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGTGTTCGATA
AGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGTATGTGAAC
GAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAGGAGTGCAC
CGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGGTCATCCCA
AAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCGGCTACTGC
GGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAATAGCCAGGTTTTCACCGTA
ACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGT
GCTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACG
GTGTAACAAGGTGAACCCTATTCCATATCACCAGCTCACGTCTTTCATTG
CCATAACGAAATTCGATGAACATCATCAGCCGGCAAAATTGTAATAAGCC
GAAAAACTGTGCTAATTTTTCTTTACGCCTTAAGCGAATATACCAC
UFO03727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8680-RC | 630 | CG8680-RC | 148..525 | 9..386 | 1890 | 100 | Plus |
| CG8680-RB | 867 | CG8680-RB | 62..439 | 9..386 | 1890 | 100 | Plus |
| CG8680-RA | 544 | CG8680-RA | 62..439 | 9..386 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5099736..5099913 | 318..141 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 5100008..5100141 | 142..9 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 5099605..5099674 | 386..317 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:24 has no hits.
UFO03727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:12 Download gff for
UFO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8680-RA | 74..451 | 9..386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:21 Download gff for
UFO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8680-RA | 62..439 | 9..386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:33 Download gff for
UFO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8680-RA | 62..439 | 9..386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:33 Download gff for
UFO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5099605..5099673 | 318..386 | 100 | <- | Minus |
| 2L | 5099737..5099913 | 141..317 | 100 | <- | Minus |
| 2L | 5100010..5100141 | 9..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:21 Download gff for
UFO03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5099605..5099673 | 318..386 | 100 | <- | Minus |
| arm_2L | 5099737..5099913 | 141..317 | 100 | <- | Minus |
| arm_2L | 5100010..5100141 | 9..140 | 100 | | Minus |
