UFO03731.5prime Sequence
1131 bp (1022 high quality bases) assembled on 2009-02-04
> UFO03731.5prime
CAGTCGACATGTCGGATCGCAAGGCGGTGATCAAGAACGCTGACATGAGC
GAGGAGATGCAGCAGGACGCTGTTGACTGCGCCACCCAGGCCCTGGAGAA
GTACAACATCGAGAAGGACATCGCCGCCTTCATCAAGAAGGAGTTCGACA
AGAAGTACAACCCCACCTGGCACTGCATCGTGGGCCGCAACTTCGGATCC
TATGTGACCCACGAGACGCGCCACTTCATCTATTTCTACCTGGGCCAGGT
GGCCATTCTGCTCTTCAAGAGCGGTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAA
GGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACG
AAATCCGGATGAGCATTCATCAGCGGGCAGATGTGAATAGGCCGGATAAA
CTGTGCTTATTTTTCTTACGGTCTTTAAAGCGTATATCAGCTGACGGTCT
GGTTATAGGTACATGACACTGACTGATGCTCAATGTTCTTACATGCATGG
ATATCACGGTTATTCCAGATTTCCATAGCTC
UFO03731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdlc2-RC | 671 | CG5450-RC | 152..418 | 9..275 | 1335 | 100 | Plus |
| Cdlc2-RB | 621 | CG5450-RB | 102..368 | 9..275 | 1335 | 100 | Plus |
| Cdlc2-RA | 675 | CG5450-RA | 156..422 | 9..275 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1344616..1344882 | 9..275 | 1335 | 100 | Plus |
| X | 23542271 | X | 4698295..4698455 | 115..275 | 430 | 84.5 | Plus |
| X | 23542271 | X | 4691737..4691845 | 9..117 | 305 | 85.3 | Plus |
Blast to na_te.dros performed 2014-11-28 21:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 844..911 | 123 | 68.1 | Plus |
UFO03731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:09 Download gff for
UFO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdlc2-RA | 128..406 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:54 Download gff for
UFO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdlc2-RA | 147..425 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:03 Download gff for
UFO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdlc2-RA | 147..425 | 1..279 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:40:03 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:38:54 has no hits.
