UFO03732.5prime Sequence
1110 bp (981 high quality bases) assembled on 2009-02-04
> UFO03732.5prime
CAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATTTATCAGAT
CTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGAAAATATGA
CGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCCCACAAACG
CCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGAAGAGATGG
GAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGATGGGAATCT
GTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAATCGACAACT
TTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGTCCAAGGAG
CAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGACTAGCTCG
CAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCAGGAAATCG
AGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGGAAAGCCGT
TTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAGCTGAAAGA
CAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAAGGAACTTA
ACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTGAAGTTCCC
GATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGACCCTGTGAT
AACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGAACACTTGC
AGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCACTCACGAT
CAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCTTTTATTGC
CGAGAATGAATGGTCTTTAGATTATGCAAGCTTTCTAGACCATTCGTTTG
ACGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATCATAATCATA
ATCACACTAGCCTAGGAGATCCTGGTCATGACTATGCTGGATTCCTCACC
AGTAAGAACGCCGGCGCAACCGAGCGTTCTGAACATCCAGAATGGAGTTC
TGAGGTCATACGTGATCCTACGACAGAGTCAGCTGCTCGAATATCATACG
CCCGGCCATG
UFO03732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHIP-RA | 1277 | CG5203-RA | 292..1158 | 9..875 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10438880..10439121 | 634..875 | 1195 | 99.6 | Plus |
| 2L | 23513712 | 2L | 10438041..10438239 | 132..330 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 10438300..10438442 | 330..472 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 10437839..10437961 | 9..131 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 10438590..10438697 | 472..579 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 10438756..10438812 | 579..635 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6806..6845 | 969..1008 | 110 | 75 | Plus |
UFO03732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:09 Download gff for
UFO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 282..1164 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:58 Download gff for
UFO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 285..1167 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:43 Download gff for
UFO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 285..1167 | 1..886 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:43 Download gff for
UFO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10438041..10438239 | 132..330 | 100 | -> | Plus |
| 2L | 10438301..10438442 | 331..472 | 100 | -> | Plus |
| 2L | 10438591..10438696 | 473..578 | 100 | -> | Plus |
| 2L | 10438756..10438812 | 579..635 | 100 | -> | Plus |
| 2L | 10438882..10439130 | 636..886 | 98 | | Plus |
| 2L | 10437832..10437961 | 1..131 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:58 Download gff for
UFO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10437832..10437961 | 1..131 | 96 | -> | Plus |
| arm_2L | 10438041..10438239 | 132..330 | 100 | -> | Plus |
| arm_2L | 10438301..10438442 | 331..472 | 100 | -> | Plus |
| arm_2L | 10438591..10438696 | 473..578 | 100 | -> | Plus |
| arm_2L | 10438756..10438812 | 579..635 | 100 | -> | Plus |
| arm_2L | 10438882..10439130 | 636..886 | 98 | | Plus |
