UFO03735.5prime Sequence
1159 bp (937 high quality bases) assembled on 2009-02-04
> UFO03735.5prime
CAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTTACGCCCTG
GACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTCGGCATCTA
TGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGACGGCCTACG
GCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTTGGGGATAC
CTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTCATTATTTT
CCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTTGCTGATCA
CCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGGAGGCCACC
TGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTACCAGAACTG
GTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGTCAACGAAC
GACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCAAGCCGGAG
AACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTACTGGCAACA
CTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGGCTTTCGAG
CTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTCGCAACGA
TTGCTCGACGTTCTTACTTTGCAAGCTTTTCTAGACCATTCCTTTTTGGC
GCGCGGGGCCCAGGTAAGTGGTCATAAATCATAATCATAATCATAATCAT
AATCCCAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGGATTCT
CACCAATAAAAAAACGCCCGGCGGCAACCGAGCGTTCCTGAACAAATCAG
ATGGATTTCTGAGGTCTTTATTGGATTCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAATTACGCCCCCGCCTTGCCACTCATCGATTACTGGTTGTA
ATCCATTTAGCCTCCTGCCGACTGGGAAACCCTCTCAAACGGCAAGAAGA
ACTAGAAGCGCCAGCGGCACACCCACCTTGGTCCCCTTGGTTATTATTTG
CCTGTGGGGGTAAAACGGGGGGGGCAAGAGTCTGCCCTAATTGGGCCCAT
GCTTTAATCTAAACTGGGGGGGAACATCTCCCCGGGGTATGGTGTGGGGA
ACAGAAAAA
UFO03735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ef-RA | 1347 | CG12845-RA | 375..1035 | 8..670 | 3265 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7027443..7027637 | 401..595 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 7026984..7027157 | 66..239 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 7027218..7027380 | 239..401 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 7027700..7027770 | 599..670 | 310 | 98.6 | Plus |
| 2R | 25286936 | 2R | 7025384..7025441 | 8..65 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:48 has no hits.
UFO03735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:23 Download gff for
UFO03735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ef-RA | 366..1033 | 1..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:55 Download gff for
UFO03735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ef-RA | 368..1035 | 1..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:35 Download gff for
UFO03735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ef-RA | 368..1035 | 1..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:35 Download gff for
UFO03735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7025377..7025441 | 1..65 | 95 | -> | Plus |
| 2R | 7026984..7027157 | 66..239 | 100 | -> | Plus |
| 2R | 7027219..7027380 | 240..401 | 100 | -> | Plus |
| 2R | 7027444..7027641 | 402..600 | 99 | -> | Plus |
| 2R | 7027702..7027770 | 601..670 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:55 Download gff for
UFO03735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2914949..2915146 | 402..600 | 99 | -> | Plus |
| arm_2R | 2915207..2915275 | 601..670 | 98 | == | Plus |
| arm_2R | 2912882..2912946 | 1..65 | 95 | -> | Plus |
| arm_2R | 2914489..2914662 | 66..239 | 100 | -> | Plus |
| arm_2R | 2914724..2914885 | 240..401 | 100 | -> | Plus |
