UFO03736.5prime Sequence
1110 bp (1018 high quality bases) assembled on 2009-02-04
> UFO03736.5prime
CAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATAGGAAGAAG
CAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGGCAATACCG
CCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCCGGATAAAG
CAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTTATAGAATC
CGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGATGCACTTA
TGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATATCGTGGTT
TGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCGGCTTGCGA
GTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAATATTTTGA
AGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGATCCAAAAA
TTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGCGTGGCCTT
ACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATATAGATACTC
CCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAAGAACCGTG
AGCACATGCACAGAAAACGAGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGAAGCCATCACAAACGGCATGATGAACCTGATCG
CAGCGCATCAGCACCTTGTCGCTTGCGTATAATATTTGCCCATGTGAAAC
GGGGCGAAGAAGTGGTCATATTGCCACGGTTAAATCAAACTGTGAACCTC
CCAGATGGCTGAAACGAAAACATATTCTCATAACCTTAGGAAATAGGCCA
GGTTCCCCCG
UFO03736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL15-RI | 950 | CG17420-RI | 288..899 | 9..620 | 3060 | 100 | Plus |
| RpL15-RH | 882 | CG17420-RH | 220..831 | 9..620 | 3060 | 100 | Plus |
| RpL15-RG | 694 | CG17420-RG | 32..643 | 9..620 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27267610..27267919 | 9..318 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 27268090..27268394 | 316..620 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:22 has no hits.
UFO03736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:22 Download gff for
UFO03736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL15-RB | 345..967 | 1..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:36 Download gff for
UFO03736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL15-RG | 23..649 | 1..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:43 Download gff for
UFO03736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL15-RG | 23..649 | 1..628 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:43 Download gff for
UFO03736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27267605..27267918 | 1..317 | 98 | -> | Plus |
| 3L | 27268092..27268400 | 318..628 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:36 Download gff for
UFO03736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2398141..2398454 | 1..317 | 98 | -> | Plus |
| 3LHet | 2398628..2398936 | 318..628 | 98 | == | Plus |
