UFO03742.5prime Sequence
1150 bp (1023 high quality bases) assembled on 2009-02-04
> UFO03742.5prime
CAGTCGACATGATCTGGTCTGGCAACGCCAGATATTCAAATGTTCAGAAT
TCGAGCATGGTGCCTCCGTCACGACCCAATGTCACCCGTCTGTCGGACGA
GTCCGTGATGCTGCGCTGGAGTGTGCCACAAAACTCTGGACTCCAGATCA
CCTTTTTCAAGGTGCAGTATCGCATGTTGGGCGACGGAAAAAATCGGAGG
AAGAACTGGCAGACGACCAGCGACAATATCCCGTACGGAAACGCGCACGG
ATCCGGGCCTGGCCAGGGGAACAGTCACTGGCGGGCGCGGAACCGGGACA
GGGAGTATGAAATGGGCAATCCGCCCAAGAACTTCACCTCCTCCGTTACG
GGACTGACCGCCGGCAAGTACTACCGCTTCCGGATCGTGGCGGTGTACTC
CAATAACGACAACAAGGAGGGCAACACCTCCCTCAAGTTCTTCCTGCAGA
ATGGAACGTCCAAGTCGAATCTGCCAGTGCCGGAACTACGCGAGGTGGAG
ACGCTTTCCGAGTCGGCCGTGGTGCTCCATTGGTCCCTGGTATCCTCGAC
TCAAAATGAGGATATAGACGGGTACTATGCCTACTATAGGCCAGCGGACT
CAGCAGCGGAGTATTTGAAGGCCACGGTGGATGGCGGAATGAGCAGGAGC
TTCAAGATAGACCTCCTTCGTCCAGGAACCCCTTATGAGTTCAAATTGCA
ATCGTTCAACTCCGACGCAGCCTCTGAATTCAGTGCTATTCGGCAAGCGA
GGACCAGAAAAACGCACGAGCAACCGGCTTCATCTTCGGCCACGCCAGTG
CCAGCCAATAAGGCAGTGGAACAGCACCAGAACTCCTTATATCCACTGAT
CGCAGTGCCGCTGGCGGAGGCATACTACTCCTCATCGCCTCATTGGTGGT
CTGCCTTTGCCTAAAGAGACGGGAAAACTCTCAGCCGGAGGATGAGAACA
ACCGCATTGGAACACATTCAAGCGACTTTGTTACCTCCGCCGTCCTGGGG
AGTTGGTGCCACCACAAAAGTGGCGATGTAAGCGCCCTCAACGGATGATC
CGAGGATGAAATATTACGCCATCCGCTGCCAAGAAACGGCATCGGATAGA
ACACTCTGACTGCATTCAAATGCTTACACGCCAGCCGTACAATCGCCTGC
UFO03742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-RA | 2721 | CG32796-RA | 194..1312 | 9..1115 | 5150 | 98.2 | Plus |
| boi-RF | 4509 | CG32796-RF | 2025..3100 | 52..1115 | 4935 | 98.1 | Plus |
| boi-RE | 4316 | CG32796-RE | 1832..2907 | 52..1115 | 4935 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2446890..2447597 | 759..52 | 3540 | 100 | Minus |
| X | 23542271 | X | 2446642..2446824 | 941..760 | 865 | 99.5 | Minus |
| X | 23542271 | X | 2446471..2446561 | 1045..956 | 270 | 89 | Minus |
| X | 23542271 | X | 2447657..2447699 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:06 has no hits.
UFO03742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:05 Download gff for
UFO03742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 185..1272 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:10 Download gff for
UFO03742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 185..1272 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:26 Download gff for
UFO03742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 189..1276 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:26 Download gff for
UFO03742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2446642..2446824 | 760..941 | 99 | <- | Minus |
| X | 2446484..2446577 | 942..1032 | 94 | <- | Minus |
| X | 2446890..2447597 | 52..759 | 100 | <- | Minus |
| X | 2447657..2447704 | 1..51 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:10 Download gff for
UFO03742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2340517..2340610 | 942..1032 | 94 | <- | Minus |
| arm_X | 2340675..2340857 | 760..941 | 99 | <- | Minus |
| arm_X | 2340923..2341630 | 52..759 | 100 | <- | Minus |
| arm_X | 2341690..2341737 | 1..51 | 94 | | Minus |
