UFO03743.5prime Sequence
1103 bp (1017 high quality bases) assembled on 2009-02-04
> UFO03743.5prime
CAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGCTCCTGATC
CTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCGCAGCCCGC
CAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGCCAATGGCA
AGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAATCATTGATA
GCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTTTTCCCCGA
CATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTCGGCCATCA
ACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGAAGGAGGCG
GAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCATCCTCGTC
CTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAAATCCAACG
AGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCTCGCCGTCC
TCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAGCTCTCCGA
GTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGCGGAGGAGA
CCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAAGGTTCCTC
AGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGTGCAGGAGG
TTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAACTTCCTGC
TGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGCAGGGCGAT
GAGGCGGCCAACTCGGTGGGCGGCAGTGCAGCAGCAGCAGTAGCAGCGGC
AGTTTGGGCGGCGATGGTGACGCCGATGGCGATAGCACTCGCAACGCCGA
TGGCTACACCGAGGGCATTCCCGGCCCAGTCACGCGCCTCGTGTGCTGGC
CAATCGCGGTCTGGCCAATCTCGTCAGGATTTGATCTGCGCGTGCGCCAC
AGCGAGAAGTCGTGAACTCAGCAAGCTGATACGGCCTGATTCGCAGCTTT
CTAAACATCGGTTTGGCCGGCGGCCCAGTTAGTGTCTACCCTAAATCTAA
CTA
UFO03743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32694-RC | 2528 | CG32694-RC | 334..1352 | 8..1018 | 4880 | 99.1 | Plus |
| CG32694-RA | 2440 | CG32694-RA | 246..1264 | 8..1018 | 4880 | 99.1 | Plus |
| CG32694-RF | 2425 | CG32694-RF | 246..1249 | 8..1018 | 4645 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10004389..10004759 | 258..628 | 1855 | 100 | Plus |
| X | 23542271 | X | 10005374..10005598 | 764..985 | 960 | 98.2 | Plus |
| X | 23542271 | X | 9993045..9993190 | 8..153 | 730 | 100 | Plus |
| X | 23542271 | X | 10005148..10005289 | 623..764 | 695 | 99.3 | Plus |
| X | 23542271 | X | 9999191..9999300 | 151..260 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:26 has no hits.
UFO03743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:04 Download gff for
UFO03743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32694-RC | 331..1357 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:07 Download gff for
UFO03743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32694-RA | 243..1269 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:24 Download gff for
UFO03743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32694-RA | 243..1269 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:24 Download gff for
UFO03743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9993042..9993189 | 1..152 | 97 | -> | Plus |
| X | 9999193..9999300 | 153..260 | 100 | -> | Plus |
| X | 10004392..10004759 | 261..628 | 100 | -> | Plus |
| X | 10005154..10005289 | 629..764 | 100 | -> | Plus |
| X | 10005375..10005602 | 765..988 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:07 Download gff for
UFO03743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9887075..9887222 | 1..152 | 97 | -> | Plus |
| arm_X | 9893226..9893333 | 153..260 | 100 | -> | Plus |
| arm_X | 9898425..9898792 | 261..628 | 100 | -> | Plus |
| arm_X | 9899187..9899322 | 629..764 | 100 | -> | Plus |
| arm_X | 9899408..9899635 | 765..988 | 97 | | Plus |
