UFO03745.5prime Sequence
1123 bp (1013 high quality bases) assembled on 2009-02-04
> UFO03745.5prime
CAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAAATGACACG
TACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGGGCCAAGAC
CGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCAGGCGATGC
GCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCAATGTGCTC
GACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCCGAACTAGG
CGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTTTGAGAAGT
GCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCGATGAGCTC
TTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGGCCGGATTG
CTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACACCTTTGCCC
AGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCGGTGACCAG
GGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGACATTAAGAA
GCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTACTGTTATC
TGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGCATTTTGCC
GGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACAAAGGTGGC
CAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCAGCTGTGGT
GGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCGAAATGGCG
GGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAGCGCACTCC
CGAACAGGAGGCCTACGAGAACCAGATGCGCCGCCAGTGCTGGGAGTCTG
GACAGATTGACTACACCGGCGCCGATTCGTTCGAGATATCTGGAAGAAAA
TATCGCAGACGCTGGAGAGGAGACCGATAGGAGTCGGAGAACTGTAGCTC
AGCAGCTTCTAGAACATTCGGTTGGCGCGCGGCCCAGGTAGTGGTCTAAT
CATATCATATCATAATCATAATCACACTAGCTAAGGAATCTGCATGACTA
GTGCTGGAATTCTTCACAATAAA
UFO03745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glycogenin-RB | 2378 | CG44244-RB | 170..1168 | 9..1001 | 4845 | 99.4 | Plus |
| Glycogenin-RH | 2010 | CG44244-RH | 170..1152 | 9..988 | 4840 | 99.7 | Plus |
| Glycogenin-RI | 2404 | CG44244-RI | 203..1194 | 16..1001 | 4810 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21204613..21204925 | 16..328 | 1565 | 100 | Plus |
| 2R | 25286936 | 2R | 21205009..21205301 | 326..618 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 21205361..21205542 | 617..798 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 21208469..21208644 | 797..971 | 830 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:45 has no hits.
UFO03745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:03 Download gff for
UFO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RB | 166..1167 | 9..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:10 Download gff for
UFO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RB | 170..1171 | 9..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:10 Download gff for
UFO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RB | 170..1171 | 9..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:10 Download gff for
UFO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21204605..21204923 | 4..326 | 98 | -> | Plus |
| 2R | 21205010..21205299 | 327..616 | 100 | -> | Plus |
| 2R | 21205361..21205541 | 617..797 | 100 | -> | Plus |
| 2R | 21208470..21208644 | 798..971 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:10 Download gff for
UFO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17092110..17092428 | 4..326 | 98 | -> | Plus |
| arm_2R | 17092515..17092804 | 327..616 | 100 | -> | Plus |
| arm_2R | 17092866..17093046 | 617..797 | 100 | -> | Plus |
| arm_2R | 17095975..17096149 | 798..971 | 99 | == | Plus |
