UFO03748.5prime Sequence
1100 bp (1002 high quality bases) assembled on 2009-02-04
> UFO03748.5prime
CAGTCGACATGATGGCCAAGGACAAGGGTCTGGCTGTGGCCGGAACGGCG
GCCCCCTTACCGGCCGCCCTCGACCACGAGTGGTCCGCCGAGGAAGAGCT
GCAGCTGTTCCATGCAATGGAAGGCCTGCGCCCGGTGGGCATCAACAAGC
ACTTCTACATGTCCTGCATTGTCCAGCGTCTGTCCAAGTCGCTGAACCGT
GAAATGCCCAGCGAGCTGATCTGGCGCCACCTGGGCACCATGTACAAGCT
GAAGGAACTGGACGATCTGGAGTCGCTGCCCTTTCCCAACGAGGAGCGCG
AGTTCAGCCTGCCGGAGCAGGATTACGGAACGCTACAGACCAAAAAGACG
GTGGAAGTGCATGCGAACGAGGAGGCTGCAGAGGCACAGTCGGCCCCTCC
AACAGCAGAGACCAATGGCAAAGCTCCACCTGCAACCAAAACGCCGGTAC
CGACGAATTCCACCAAGGACGGCGACAAAAAGCCCGTCGCCAAGCCCCAG
GAGCAGCTGCCCAAGCGTCCGGCCAAGCGCACACGCGGCTCCATGTCCAA
CGAGTCCATCAGCCCCTCCACTACGCCGCCGCCGGTGCAGAGCAACAAGC
GCCGTCGCATAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCA
TCAGCACCTTGTCGCTTGCGTATATATTGCCCATGTGAAACCGGGGGCGA
AGAGTGTCATATTGCCACGTTTATCAAACTGTGAACTCACCAGGATGCCT
GAACGAAACTTTCTCATTAATCGTTAGAATTGGCCAGGTACCGGTAACGC
UFO03748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 758 | CG13746-RA | 69..671 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8900893..8901307 | 423..9 | 2060 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8900653..8900842 | 611..422 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:36 has no hits.
UFO03748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:07 Download gff for
UFO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 59..668 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:50 Download gff for
UFO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 62..671 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:59 Download gff for
UFO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 62..671 | 1..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:59 Download gff for
UFO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8900653..8900840 | 424..611 | 100 | <- | Minus |
| 2R | 8900893..8901314 | 1..423 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:50 Download gff for
UFO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4788158..4788345 | 424..611 | 100 | <- | Minus |
| arm_2R | 4788398..4788819 | 1..423 | 98 | | Minus |
