UFO03750.5prime Sequence
1141 bp (1029 high quality bases) assembled on 2009-02-04
> UFO03750.5prime
CAGTCGACATGGCCGGCATGGGCACTGGATTTTCCAAGTGCTTTATACTC
TTCATGGCAATTGTCATACTCGTCCAGGGAGTTGCCTACTTGGGCTTGTC
CATCTGGGGCATCACCTTCCGAGATTGTCCGGATGGCGTTACTGATTTCA
GCGAAAATCCCTTCAAGTACGCCATGGAGCTCATTTACTTTGCACAGGAG
GAATGTGGTGAGCCGGTGCTGAAGGTGGCAGACGAACAATTTAGTTTGAA
CATAGATTGGCAGACGTCCTATGCCATTACCAACCGGGAGTTCATCTTCA
TGATAACCTACGCAGTTATTAGCGGAGTCTGGGTAGCCACTTCGGTGTTG
GTAATAACCACTTTGTGCAATCGCACCACCAAGCTGATCTCCGGAGTGGT
CTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCTAGATGTGG
TGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGTCCATGAAA
GATGCACTTGATTACATTGGAGTCTCATATAGCGAAATTGTTAGTAATGT
CTGGACTCTAATGGAGCCCTTCGGCGTATACTTCTCGACGCCATCGATTC
TTCTACTGTGCCTCACAAGTCGCGTAGCCATCATCTGGCTGCTGAACATC
ATTGGAGTTACCTTCTGTCTCTCGTTGTCCGGAATCATGGCGGAGCAGAA
TGCGAAATCAGCCGCCTTGAGCAGGAGCCAGGCTCCCACCCGACAGCCGA
CACCACAGCCTGCGGTGGCATTAGTCCAGCCGGTGGTGGAGGCCACGCTA
GTGGAATCCATTCAGCCTTCGGCCCCGCAAGAGAGCCCTCAATATCCGGA
GCAGATCCGACCCAAGCCGCTGCCCATTTTCATTCCCTCGGAGCAGGTGC
CCAGCGTCCAAACTCCCAGCAGTTCGCACCCGGAAATCGCACCACTTTGC
ATCGCCGGTGATGGTGCTACCACCACAAGTTCCTCAGCAGAGAGATGTTG
TGTCCCCGCAGCCTGACATCACACCTTATCGCACCACGAGGCTCATTCCG
GACCACCTCAACTATCACCTTCGGGCCAAACTCCCGGTGCTCCTTCGCGG
CGGTCCAAACTTGGGGGTGACGTGCGCCCTAAACAAATCGC
UFO03750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1246-RD | 1840 | CG1246-RD | 409..1544 | 9..1136 | 5235 | 98.1 | Plus |
| CG1246-RC | 1674 | CG1246-RC | 243..1378 | 9..1136 | 5235 | 98.1 | Plus |
| CG1246-RE | 1527 | CG1246-RE | 96..1231 | 9..1136 | 5235 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2649256..2649833 | 491..1066 | 2605 | 98.3 | Plus |
| 3L | 28110227 | 3L | 2648856..2649017 | 196..357 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 2649072..2649205 | 358..491 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 2648664..2648787 | 72..195 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 2648532..2648596 | 9..73 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:29 has no hits.
UFO03750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:02 Download gff for
UFO03750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1246-RB | 209..1329 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:52 Download gff for
UFO03750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1246-RB | 211..1331 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:38 Download gff for
UFO03750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1246-RE | 89..1209 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:38 Download gff for
UFO03750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2648525..2648594 | 1..71 | 95 | -> | Plus |
| 3L | 2648664..2648787 | 72..195 | 100 | -> | Plus |
| 3L | 2648856..2649017 | 196..357 | 100 | -> | Plus |
| 3L | 2649072..2649205 | 358..491 | 100 | -> | Plus |
| 3L | 2649257..2649887 | 492..1114 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:52 Download gff for
UFO03750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2648525..2648594 | 1..71 | 95 | -> | Plus |
| arm_3L | 2648664..2648787 | 72..195 | 100 | -> | Plus |
| arm_3L | 2648856..2649017 | 196..357 | 100 | -> | Plus |
| arm_3L | 2649072..2649205 | 358..491 | 100 | -> | Plus |
| arm_3L | 2649257..2649887 | 492..1114 | 97 | | Plus |
