UFO03754.5prime Sequence
965 bp (-106 high quality bases) assembled on 2009-02-04
> UFO03754.5prime
CAATCCACATGATGAGCCTGACTGTGCTCTCGCCACGGCTCCGTTTTAGA
CGAATCCTGCAAGGCATGATGTTAACCGTCGCCGTCGTCTATCTGACCCT
ACTGCTCTACCAAAGCGCCTACGGATATCCGGGCATCCTCGTGCCGCACA
GCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACCCTTCTCGACCAG
CTGCTCCAGGACTACGTGCAATCCTCCACGCCCAACCAGCCGGGGGCTGG
AGCTCCGGCCGCCTCCCCCACCAACGTCATAATCCGCAAGGATATACGCA
GCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGGCCACGCTG
CTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTCCGCGATCT
GTCCCAAAGAGCGGTGACGGCGACTCCACAGCCGCCGGTCACCGAGTTGG
ATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACGACACCCGG
CTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGATCAGACCTG
GTTCTTCACGGACACCGATGATCACTACTACCAGGAGAAGACAAAGGGCC
ATCTCATCAACACTAAATGCTCACAGGGCCATTTTCGCAAGGCGCTTTGC
TGCATAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGCAAAAAGTG
GTTCTGTCACTTCGACGATGACTACTATGTCATGTGCCGAGGCTGGTCTG
ACTGCTGGACGAGTATAGCCCCAGCGCGTATTGATATCTGGGACATGCGA
GCATCTCGTCCCCGCTGGAGATCCTGTTGCACAGCATAACACGACTGCAA
ACGATGATATTACCTTGTGATTCGCACTGGCGGCGCTGGCTTCTGCCTCA
GTCGAGTCCTGACTTCAAAATGCTACCATAGTATGAGGGGGTTAGATTAT
CGGCATTGCGACTCA
UFO03754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fng-RA | 1959 | CG10580-RA | 212..1166 | 9..958 | 3825 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20943564..20943968 | 545..141 | 1920 | 98.3 | Minus |
| 3L | 28110227 | 3L | 20949172..20949301 | 138..9 | 515 | 93.1 | Minus |
| 3L | 28110227 | 3L | 20935411..20935515 | 699..595 | 495 | 98.1 | Minus |
| 3L | 28110227 | 3L | 20927705..20927847 | 839..698 | 425 | 88.1 | Minus |
| 3L | 28110227 | 3L | 20936666..20936717 | 594..543 | 260 | 100 | Minus |
| 3L | 28110227 | 3L | 20926787..20926870 | 920..838 | 205 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:59 has no hits.
UFO03754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:59 Download gff for
UFO03754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 202..1136 | 1..931 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:06 Download gff for
UFO03754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 205..1139 | 1..931 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:21 Download gff for
UFO03754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 205..1139 | 1..931 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:21 Download gff for
UFO03754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20935413..20935515 | 595..697 | 98 | <- | Minus |
| 3L | 20936666..20936714 | 546..594 | 100 | <- | Minus |
| 3L | 20943564..20943968 | 141..545 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:06 Download gff for
UFO03754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20928513..20928615 | 595..697 | 98 | <- | Minus |
| arm_3L | 20929766..20929814 | 546..594 | 100 | <- | Minus |
| arm_3L | 20936664..20937068 | 141..545 | 98 | <- | Minus |
