UFO03756.5prime Sequence
1101 bp (1001 high quality bases) assembled on 2009-02-04
> UFO03756.5prime
CAGTCGACATGGCGGAATTCGAGGAGGACTTGCCCCACAATGGCCTGATG
GACGGGATCGCCTCGGGAGTGGGCGTTCCCGTGGAGGCACTCCGGCTGCT
ACTCACCATTCTGGCAGGTTATCCGGTGGCAGCATTATATCAAAAATTTA
TTTCTGTTATTGCCGATAAAACAGTGCATCACATGTTCTTTGCTGGATGC
GGCGCTGGATTGTGTTACTTTAACTATGGGCTCGACACATATCACTCACT
GATAGCCATCCTAACCACCTATTTCCTGGTACTCCTCCTGCGAAAGAAGA
CGCAGATATTTCTGGCCATCAACTTCGTTTTCCATATGAGCTACCTGCTG
CTGGGATATTTCTACACGTCCAGCAATGATTACGATATTCTGTGGACGAT
GCCTCACTGCATTTTGGTTCTACGAATGATTGGCTATGGTTTTGACATCA
CCGACGGCCTGAAAGAGGAGTCGGAATTGTCTAAGGACCAAAAGGAAACT
GCGCTGAAGAAACCGCCCTCTCTGCTGGAGCTCCTGGCCTTTTCCTACTT
CCCCAGTGGATTTTTGGTTGGACCGCAGTTCCCATTCCGCCGTTACAAGG
CCTTTGTCGATGGCGAATTCCGTCAGCACGAAGGAAATGTGGAAGCTGGC
GTTCGTCGCTTTGGAGCTGGTGCGTTCTATCTGATTGTGTGTCAAGTGGG
ATTGAGATATCTGCCCGATCGTACTTCCTCACTCCGGAGTTTGCGCAAGT
TTCATTCGTCAAGAGGATTTATTTACTCGGCTTCTGGGCCAAATTCAGTC
TGTACAAGTACATATCCTGCTGGCTGCTCACCGAGGGCGCCCTTATTTGC
ATTGGTCTGACCTACAAGGCGAGGACAGACGGACAGCCCGATTGGTCGGG
CTGCAGCATGTGAGCTAAAGCTGCTGGAGACTGGGACACATGGAGCACTA
CGTTCAAGCTTCATGTTAACCACGAACAATTGGTTGGACAGTATATTCTA
CAGGCGACTTAAGTTCCTCACCACCCGACCATCAGCTATGGGCGCGCTTG
GTTTCTTGGCGGTTCTGACGGAAACCACGGTTACTATCTTGACATTTCTC
A
UFO03756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nes-RC | 2231 | CG9655-RC | 138..1246 | 8..1101 | 4835 | 96.9 | Plus |
| nes-RB | 1668 | CG9655-RB | 41..1149 | 8..1101 | 4835 | 96.9 | Plus |
| nes-RA | 2377 | CG9655-RA | 154..1262 | 8..1101 | 4835 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19258635..19259571 | 1041..115 | 3965 | 97.3 | Minus |
| 3L | 28110227 | 3L | 19260113..19260224 | 119..8 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:57 has no hits.
UFO03756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:59 Download gff for
UFO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nes-RC | 138..1221 | 8..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:18 Download gff for
UFO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nes-RA | 154..1237 | 8..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:14 Download gff for
UFO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nes-RA | 154..1237 | 8..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:14 Download gff for
UFO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19258595..19259568 | 118..1078 | 97 | <- | Minus |
| 3L | 19260115..19260224 | 8..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:18 Download gff for
UFO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19251695..19252668 | 118..1078 | 97 | <- | Minus |
| arm_3L | 19253215..19253324 | 8..117 | 100 | | Minus |
