UFO03765.5prime Sequence
1121 bp (1013 high quality bases) assembled on 2009-02-04
> UFO03765.5prime
CAGTCGACATGTCGGCCTTCACGGATTCGGCGCTACTCAAGAAGCTGGCC
GAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTCTCCCTGTGGCTAAT
TCACCACCGAAAACACAGTGCAGCGATTGTAAGGACCTGGCAGCGGGAGC
TGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCATGTACCTGGCCAAC
GACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAGTACGGCAAGGAGTA
CAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGGCGAGAAGTGCAACT
CGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAAACATCTGGCTGGAG
CGGGGCGTCTACGATCCCAAGACCATTGCCGACTGGAGGTCGCGATTACA
CAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGGCAAGACCAATGGCG
ATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCGGCAGCGGCAAGCCC
GAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAGGATCGCCACTCTAA
GTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAGCGCGAACTCAGCTC
CTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGAACGGCCACACGCCA
CCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAGGAGCTCATCAGGGC
CCTGACCAGCATCGAAAACTCCGCATCCAGCGATGCTGTGGTGCGCGAAC
GTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTAGCTGCATCAGCAAG
CTGGAGGATAACGACAAGGCCAAGGAACTGGCCATACAAGGTGACCGAAG
CTGTGGATCTGCTGAACGACTACATGCTCGGTTGCGGCGGAGATGGAGGA
GCGCTCCAAGTTGGCGACCATGCTGCGAGATTTCAAGCGAGCAGAGGACT
TCTCTCCAGGCTGAGCAACGCCTCGATGTACGTTCTCATGTCTAGCAATG
CATGTCCTTGGGGGTTGTTAGAGCAAGCTTCTAGACCATCGTTGGCGCGC
GGCCAGTAGTGTCATAATCATATCTAATCATATCTATCAAACTAGCTAGG
AAATCTGTCATGGACAATGCT
UFO03765.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9018-RB | 1283 | CG9018-RB | 125..1148 | 8..1022 | 4775 | 98.5 | Plus |
| CG9018-RA | 1395 | CG9018-RA | 125..1101 | 8..978 | 4660 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2236051..2236730 | 838..159 | 3385 | 99.9 | Minus |
| 3L | 28110227 | 3L | 2236801..2236952 | 159..8 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 2235820..2235974 | 986..839 | 430 | 94.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:08 has no hits.
UFO03765.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:55 Download gff for
UFO03765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9018-RB | 114..1149 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:15 Download gff for
UFO03765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9018-RB | 118..1153 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:55 Download gff for
UFO03765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9018-RB | 118..1153 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:55 Download gff for
UFO03765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2235776..2235972 | 841..1027 | 92 | <- | Minus |
| 3L | 2236050..2236729 | 160..840 | 99 | <- | Minus |
| 3L | 2236801..2236956 | 1..159 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:15 Download gff for
UFO03765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2235776..2235972 | 841..1027 | 92 | <- | Minus |
| arm_3L | 2236050..2236729 | 160..840 | 99 | <- | Minus |
| arm_3L | 2236801..2236956 | 1..159 | 98 | | Minus |
