UFO03771.5prime Sequence
1104 bp (1004 high quality bases) assembled on 2009-02-04
> UFO03771.5prime
CAGTCGACATGGTTGTCAAGAAGCCCAGGCCAAAGAAGAAGCCAGTGACC
AAGAAGGTGGCTCCCGCTCCTCTGGCTGTCAAGAAGCCCGTGGTCAAGAA
GGTTGTTAACCAGCTGTTCGAGAAGCGTCCCAAGAACTTCGGAATCGGCC
AGAATGTGCAGCCCAAGCGCGATCTGTCCCGTTTCGTTCGCTGGCCCAAA
TACATCCGGGTGCAGCGTCAAAAGGCTGTGCTCCAGAAGCGCCTGAAGGT
CCCACCACCAATCCACCAGTTCAGCCAGACTCTGGACAAGACCACCGCCG
TGAAGCTGTTCAAGCTGCTGGAGAAGTACCGCCCCGAGTCGCCGCTGGCC
AAGAAGCTGCGCCTGAAGAAGATCGCCGAGGCTAAGGCCAAGGGCAAGGA
TGTGGAGCCCAAGAAGAAGCCCAGCTATGTGTCCGCCGGTACCAACACGG
TGACCAAGCTGATCGAGCAGAAGAAGGCCCAACTGGTGGTCATTGCCCAC
GATGTTGATCCTCTGGAGCTGGTGCTCTTCCTGCCCGCCCTGTGCCGCAA
GATGGGCGTGCCCTACTGCATTGTGAAGGGTAAGGCTCGTCTGGGTCGCC
TGGTGCGTCGCAAGACCTGCACCACCCTCGCCCTGACCACCGTCGATAAC
AACGACAAGGCCAACTTCGGCAAGGTCCTGGAGGCTGTGAAGACCAACTT
CAACGAGCGCCACGAGGAGATCCGTCGCCACTGGGGCGGTGGTATCCTTG
GCTCCAAGAGTCTGGCCCGCATCTCTAAGCTGGAGCGCGCCAAGGCACGC
GAGCTTGCCCAGAAGCAGGGTGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATTCAGATGGAGTTC
TTGAGTTCATTACTGGATCTATTCAACAGGAGTCCAAGCGAGCTCGAATT
CATTACCGCCCCGCCCTTGCACCTCACGCAGTACTGTGAATCCATAAGCA
TTCG
UFO03771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL7A-RG | 971 | CG3314-RG | 46..858 | 9..821 | 4065 | 100 | Plus |
| RpL7A-RF | 1130 | CG3314-RF | 86..898 | 9..821 | 4065 | 100 | Plus |
| RpL7A-RE | 1011 | CG3314-RE | 86..898 | 9..821 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6531835..6532206 | 518..147 | 1860 | 100 | Minus |
| X | 23542271 | X | 6531129..6531433 | 821..517 | 1525 | 100 | Minus |
| X | 23542271 | X | 6532297..6532423 | 148..22 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:21 has no hits.
UFO03771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:57 Download gff for
UFO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7A-RC | 44..856 | 9..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:51 Download gff for
UFO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7A-RD | 175..987 | 9..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:55 Download gff for
UFO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7A-RE | 86..898 | 9..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:55 Download gff for
UFO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6531129..6531431 | 519..821 | 100 | <- | Minus |
| X | 6531835..6532205 | 148..518 | 100 | <- | Minus |
| X | 6532298..6532429 | 15..147 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:51 Download gff for
UFO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6426331..6426462 | 15..147 | 96 | | Minus |
| arm_X | 6425162..6425464 | 519..821 | 100 | <- | Minus |
| arm_X | 6425868..6426238 | 148..518 | 100 | <- | Minus |
