UFO03773.5prime Sequence
1031 bp (839 high quality bases) assembled on 2009-02-04
> UFO03773.5prime
CAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAAGGAGGACC
ACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTTGCGAGTCC
CACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATGGTTCAACG
TGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCCAGGAGGTG
TTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCACTGGGCGA
GCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGGATTGGAGG
CCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCAGCACCTAC
AGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTACAACTGCGG
CGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCCTCAGCCGA
AGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCGACTGCCCG
CACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATAAGCAACAA
TAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCACCGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACACTAGCTAGAGTCTGTCATGACTAGT
GCTGATCTCACATAAAACGCCGCGCACGAGCGTCTGACAATCAGATGAGT
CTGAGTCATACTGATCTATCACAGATCAGCGAGCTCGATATCAATACGCC
CGCCTGCACTCATCGCAGTACTGTGTATCATAGCATCTGCGACTGAGCAT
CACAACGCATGATGACTGATCGCAGCGCATCAGCACTGTCGCTGCTTAAT
ATTGCATGTGAACGGGCGAGAGTGCATATGCAGTAATCAACTGGTGACTC
ACCAGATGCTGAACGAAACATATCCATACTAGAATGCAGTTACCGTACGC
CATCTGAATATGGAACTGCGATTCGATCCTC
UFO03773.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-28-RA | 1152 | CG17334-RA | 299..884 | 8..593 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5656603..5656753 | 211..361 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 5656823..5656973 | 362..512 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 5656316..5656455 | 73..212 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 5657035..5657116 | 512..593 | 410 | 100 | Plus |
| 3L | 28110227 | 3L | 5654979..5655046 | 8..75 | 340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 502..562 | 124 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2393 | 519..597 | 118 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 527..568 | 113 | 76.7 | Plus |
UFO03773.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:50 Download gff for
UFO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-28-RA | 290..882 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:11 Download gff for
UFO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-28-RA | 292..884 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:52 Download gff for
UFO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-28-RA | 292..884 | 1..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:52 Download gff for
UFO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5654972..5655046 | 1..75 | 96 | -> | Plus |
| 3L | 5656319..5656455 | 76..212 | 100 | -> | Plus |
| 3L | 5656605..5656753 | 213..361 | 100 | -> | Plus |
| 3L | 5656823..5656973 | 362..512 | 100 | -> | Plus |
| 3L | 5657036..5657116 | 513..593 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:11 Download gff for
UFO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5648072..5648146 | 1..75 | 96 | -> | Plus |
| arm_3L | 5649419..5649555 | 76..212 | 100 | -> | Plus |
| arm_3L | 5649705..5649853 | 213..361 | 100 | -> | Plus |
| arm_3L | 5649923..5650073 | 362..512 | 100 | -> | Plus |
| arm_3L | 5650136..5650216 | 513..593 | 100 | == | Plus |
