UFO03778.5prime Sequence
1133 bp (1037 high quality bases) assembled on 2009-02-04
> UFO03778.5prime
CAGTCGACATGGCTCTTATTTTGCAAGTGATTTCTACAGGAATCTACATA
GTGGGTTCTCTTAGCATCGTCGCTTATCTCTACGAAAACTTAAAGTCCTT
GTTCAGCATTATCAAGTCTGTTGTGGAACCGTTCTTCAGGCCGAATTTGC
CAAAGACTTTGGCGGAGAAATTCGGAAATTGGGCAGTGGTGACCGGTGCG
ACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGTCAGGGTCT
TAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGCAGTCACCA
ACGAGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTGTTGCGGAC
TTTGCAAAGGGACGCGAGGTGTACGCTCATATCGAAAAGGAACTGAATGG
AATCGAAGTTGGAATTTTGGTCAACAATGTGGGCACGATTCACGACCCGG
AAAGCCTTGACAAGGTATCGGAGGACATGTTGTGGGACCTTCTCACCGTC
AACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGATGAT
TAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTCCGAACTCC
AGCCCCATCCCAATTTGACTGCTTATGCGGCTACCAAGAAGTTCGTTACC
CATTTTACTAAAGGTTTAGAATATGAGGTGGCCGAACACAATATCCATGT
GCAGTTGGTTATGCCAGCCTTTGTGGCCACCAATATGAATTCCTATTCCG
ATAAAGTGAGGCAAGGAGGACTGCTTTTCCCCAACGCTTATTCCTATGCC
CGGTCCGCAGTCTTTACACTGGGAAAGACGAGCGAGACCAACGGTTTCTG
GGTTCATGGATTACAGTACGCCTTCATGAAGTGGCTCCCATGGATATTCG
TACTTACTTCGGATACCAACTCTTTAAACGAATGAGAATCGAGGCCATGG
AGCACAGACTGAAAACCAAAACTTTCTGCAAGCTTTCTAGACCATTCGTT
TGGCGCCGCGGCCAGTAGTGGTCATATCATATCATATCATATCATATCAC
CAACTAGCCTAGAGATCTGTATGACTAGTGCTGATTCCTCAGCAATAAAA
CGCCCGGCGCCACGAGCGTCTGACAATTCGAAT
UFO03778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31810-RA | 1138 | CG31810-RA | 35..1008 | 7..977 | 4795 | 99.7 | Plus |
| CG31809-RC | 1186 | CG31809-RC | 119..1057 | 42..977 | 4470 | 98.6 | Plus |
| CG31809-RB | 1338 | CG31809-RB | 271..1209 | 42..977 | 4470 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16849395..16849841 | 866..420 | 2235 | 100 | Minus |
| 2L | 23513712 | 2L | 16853953..16854399 | 866..420 | 2235 | 100 | Minus |
| 2L | 23513712 | 2L | 16852155..16852334 | 186..7 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 16843528..16843896 | 851..483 | 810 | 81.3 | Minus |
| 2L | 23513712 | 2L | 16858300..16858444 | 186..42 | 680 | 97.9 | Minus |
| 2L | 23513712 | 2L | 16850149..16850282 | 318..185 | 640 | 98.5 | Minus |
| 2L | 23513712 | 2L | 16854707..16854840 | 318..185 | 640 | 98.5 | Minus |
| 2L | 23513712 | 2L | 16849984..16850095 | 420..309 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 16854542..16854653 | 420..309 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 16849162..16849268 | 965..860 | 485 | 99.1 | Minus |
| 2L | 23513712 | 2L | 16853763..16853869 | 965..860 | 380 | 92.5 | Minus |
| 2L | 23513712 | 2L | 16844678..16844803 | 310..185 | 300 | 82.5 | Minus |
| 2L | 23513712 | 2L | 16844509..16844618 | 420..311 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:49 has no hits.
UFO03778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:49 Download gff for
UFO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31810-RA | 26..1006 | 1..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:04 Download gff for
UFO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31810-RA | 28..1008 | 1..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:46 Download gff for
UFO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31810-RA | 28..1008 | 1..977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:46 Download gff for
UFO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16849162..16849261 | 867..965 | 99 | <- | Minus |
| 2L | 16849395..16849840 | 421..866 | 100 | <- | Minus |
| 2L | 16849984..16850094 | 310..420 | 100 | <- | Minus |
| 2L | 16850158..16850280 | 187..309 | 100 | <- | Minus |
| 2L | 16852155..16852340 | 1..186 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:04 Download gff for
UFO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16849162..16849261 | 867..965 | 99 | <- | Minus |
| arm_2L | 16849395..16849840 | 421..866 | 100 | <- | Minus |
| arm_2L | 16849984..16850094 | 310..420 | 100 | <- | Minus |
| arm_2L | 16850158..16850280 | 187..309 | 100 | <- | Minus |
| arm_2L | 16852155..16852340 | 1..186 | 97 | | Minus |
