UFO03780.5prime Sequence
1193 bp (1070 high quality bases) assembled on 2009-02-04
> UFO03780.5prime
CAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGCGCCTGCAG
GCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGCTCAATATC
ACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAAATCCCTGC
ACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACAAGTACAAC
TACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCATCCGCCGCA
GGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACATGCGCAGCA
ACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCTTTGTTCGC
GGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTGCTCAAAAA
GGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCAAATAGCCG
TGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAGCCGAATCC
TTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCATGCTCGCGG
TCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGTGCGCCTGG
AGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGACGCCGGAG
CAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAGATCATCAA
CTCGCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGG
CGGCACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAAATTACCCCCCCGC
CCTGCCCCTCATCGCAGTACTGTTGTATTCATTAGCATTCTGCCGACATG
AGCCATCACAAACGGCATGATGACCTGAATCGCCAGCGCATCAGCACTTG
TCGCCTTGCGTATAATATTTGCCCATGTGAAACGGGCAAGAAGTGGTCCA
TATTGGCCAGTTAATCAACTGTGACCTCACCAGGATGCTGAACGAACATT
CATAATCGTAAGAATAGCCAGTTTCACCCATTACCCGCCCCAC
UFO03780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL22-RA | 973 | CG4742-RA | 143..841 | 9..707 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16784075..16784344 | 9..278 | 1350 | 100 | Plus |
| X | 23542271 | X | 16784744..16784960 | 491..707 | 1085 | 100 | Plus |
| X | 23542271 | X | 16784418..16784631 | 279..492 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:37 has no hits.
UFO03780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:47 Download gff for
UFO03780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL22-RA | 122..824 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:32 Download gff for
UFO03780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL22-RA | 143..845 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:09 Download gff for
UFO03780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL22-RA | 143..845 | 9..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:09 Download gff for
UFO03780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16784075..16784344 | 9..278 | 100 | -> | Plus |
| X | 16784418..16784631 | 279..492 | 100 | -> | Plus |
| X | 16784746..16784964 | 493..713 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:32 Download gff for
UFO03780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16678108..16678377 | 9..278 | 100 | -> | Plus |
| arm_X | 16678451..16678664 | 279..492 | 100 | -> | Plus |
| arm_X | 16678779..16678997 | 493..713 | 98 | == | Plus |
