UFO03781.5prime Sequence
1092 bp (983 high quality bases) assembled on 2009-02-04
> UFO03781.5prime
CAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGCCAGCGATG
TTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTGCTCTGTTT
GCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCACCTGGGGTC
ATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTTACCTGACG
CCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAAGCCAGCGA
TAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGCCGATGAAG
CGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTGTGGTCCTC
CGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGAGCGGCTCA
TCTCGAGGTGTCCATCTATGGAGTGGACCTGGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTGTCCATATTGGCCACGTT
TAAATCAAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAACATAT
TCTCATAACCTTTAGGGAATAGGCCATGTTTTCACGTAACACGCACATCT
TGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGATATTCCCTCAGA
GCGATGAAAACGTTTCCGTTTGCCATGAACGGTGTACAGGGTGAACACTA
TCCTATCACCAGCTCACGTCTCCATGCATACGATCCGATGAA
UFO03781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30411-RA | 1237 | CG30411-RA | 124..552 | 3..431 | 2130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23416062..23416298 | 3..239 | 1170 | 99.6 | Plus |
| 2R | 25286936 | 2R | 23416358..23416553 | 236..431 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:04 has no hits.
UFO03781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:47 Download gff for
UFO03781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30411-RA | 115..560 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:44 Download gff for
UFO03781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30411-RA | 121..566 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:44 Download gff for
UFO03781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30411-RA | 121..566 | 1..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:44 Download gff for
UFO03781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23416059..23416298 | 1..239 | 99 | -> | Plus |
| 2R | 23416362..23416553 | 240..431 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:44 Download gff for
UFO03781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19303582..19303821 | 1..239 | 99 | -> | Plus |
| arm_2R | 19303885..19304076 | 240..431 | 100 | == | Plus |
