UFO03782.5prime Sequence
1095 bp (1019 high quality bases) assembled on 2009-02-04
> UFO03782.5prime
CAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATGTCGAATTC
GTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCCGTCGACCT
AGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGCGCTGATCG
AGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCAAGCTGGAT
GAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAGCAGGGCTG
CTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGAGGAGAACG
GCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGCTTGGTGAG
AGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGCATGGATCC
CGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCAGCGCCTGA
TGAGCGATCCTGTCGTCTTCGACGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAT
AAACCCTTTAGGGAAATAGGCCAGGGTTTCACCGTACACGCCACATCTTG
CGATAATTGTGTAGAACTGCGGAATCGTGTGGTATTCCACTCCAGAGCGA
TGAAACGGTTCCAGTTGATCATGAAACGGGTAACAAGTAACACTA
UFO03782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlc1-RD | 1414 | CG5596-RD | 66..530 | 9..473 | 2310 | 99.8 | Plus |
| Mlc1-RB | 929 | CG5596-RB | 66..530 | 9..473 | 2310 | 99.8 | Plus |
| Mlc1-RA | 882 | CG5596-RA | 66..489 | 9..432 | 2105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27658611..27658921 | 350..40 | 1540 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27658469..27658556 | 432..345 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 27658073..27658113 | 473..433 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:11 has no hits.
UFO03782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:53 Download gff for
UFO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc1-RB | 80..555 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:12 Download gff for
UFO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc1-RB | 58..533 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:40 Download gff for
UFO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc1-RB | 58..533 | 1..477 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:40 Download gff for
UFO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27658073..27658113 | 433..473 | 100 | <- | Minus |
| 3R | 27658469..27658555 | 346..432 | 100 | <- | Minus |
| 3R | 27658616..27658921 | 40..345 | 99 | <- | Minus |
| 3R | 27659929..27659965 | 1..39 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:12 Download gff for
UFO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23483795..23483835 | 433..473 | 100 | <- | Minus |
| arm_3R | 23484191..23484277 | 346..432 | 100 | <- | Minus |
| arm_3R | 23484338..23484643 | 40..345 | 99 | <- | Minus |
| arm_3R | 23485651..23485687 | 1..39 | 92 | | Minus |
