UFO03783.5prime Sequence
1138 bp (999 high quality bases) assembled on 2009-02-04
> UFO03783.5prime
CAGTCGACATGCGCACATTTGTTTGCCTTGCCCTGGCGACCATTCTCCTG
GTCGCCGGCTCATCAGCAGCCACATATGATCCTGTGGCGGCGCAACTTCT
GGATGTGGATGCAGGTGTCCAGGCTCCGGTGGCAGCACGCCAAGCACGTC
AGTTTGGCGGCGGCTTTGGCGGTCCGGGAGGCGGTTTCGGAGGTCCAGGC
GGCGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCCAGGCGGTGGATT
CGGAGGTCAAGGCGGCGGATTCGGAGGTCAAGGCGGCTTCGGAGGCGGTG
GCTTTGGTGGACGTCCAGGTGGCGGCTTTGGCGGTCCGGGAGGCGGCTTC
GGAGGACCAGGCGGTGGCTTCGGTGGCGGATTTGGAGGCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTACACGCCACATCTTGCGAATATATGTGTAGAAACTGCGGAATCGTC
GTGTATTCACTCCAGAGCGATGATACGTTTCAGTTTGCTCATGGAAAACG
GTGTACAGGTGAACACTATCCATATCACCCAGCCTCACCGTCTTTCATGC
ATACGAATCGGATGAACATCATCAGGCGGCAGAAATGTAAATAGGCGAAT
AAAACCTTGGCCTTATTTTCTTTACGACCTTTAAAGGG
UFO03783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-RB | 851 | CG9757-RB | 57..437 | 9..389 | 1905 | 100 | Plus |
CG9757-RA | 568 | CG9757-RA | 57..437 | 9..389 | 1905 | 100 | Plus |
CG9757-RB | 851 | CG9757-RB | 204..292 | 198..286 | 310 | 89.9 | Plus |
CG9757-RB | 851 | CG9757-RB | 246..334 | 156..244 | 310 | 89.9 | Plus |
CG9757-RA | 568 | CG9757-RA | 204..292 | 198..286 | 310 | 89.9 | Plus |
CG9757-RA | 568 | CG9757-RA | 246..334 | 156..244 | 310 | 89.9 | Plus |
CG9757-RB | 851 | CG9757-RB | 204..272 | 219..287 | 225 | 88.4 | Plus |
CG9757-RB | 851 | CG9757-RB | 267..335 | 156..224 | 225 | 88.4 | Plus |
CG9757-RA | 568 | CG9757-RA | 204..272 | 219..287 | 225 | 88.4 | Plus |
CG9757-RA | 568 | CG9757-RA | 267..335 | 156..224 | 225 | 88.4 | Plus |
CG9757-RB | 851 | CG9757-RB | 207..259 | 321..373 | 205 | 92.5 | Plus |
CG9757-RB | 851 | CG9757-RB | 369..421 | 159..211 | 205 | 92.5 | Plus |
CG9757-RA | 568 | CG9757-RA | 207..259 | 321..373 | 205 | 92.5 | Plus |
CG9757-RA | 568 | CG9757-RA | 369..421 | 159..211 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13611997..13612377 | 389..9 | 1905 | 100 | Minus |
3R | 32079331 | 3R | 13612100..13612188 | 244..156 | 310 | 89.9 | Minus |
3R | 32079331 | 3R | 13612142..13612230 | 286..198 | 310 | 89.9 | Minus |
3R | 32079331 | 3R | 13612099..13612167 | 224..156 | 225 | 88.4 | Minus |
3R | 32079331 | 3R | 13612162..13612230 | 287..219 | 225 | 88.4 | Minus |
3R | 32079331 | 3R | 13612013..13612065 | 211..159 | 205 | 92.5 | Minus |
3R | 32079331 | 3R | 13612175..13612227 | 373..321 | 205 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:07:53 has no hits.
UFO03783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:52 Download gff for
UFO03783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 45..433 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:45 Download gff for
UFO03783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 49..437 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:30 Download gff for
UFO03783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 49..437 | 1..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:30 Download gff for
UFO03783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13611997..13612384 | 1..389 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:45 Download gff for
UFO03783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9437719..9438106 | 1..389 | 98 | | Minus |