UFO03784.5prime Sequence
1117 bp (1018 high quality bases) assembled on 2009-02-04
> UFO03784.5prime
CAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGCCACAGGCC
GCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAGGTGTACAT
CTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGCCGGCGTGC
CCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACGACTACACG
GTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACTGGAGTATC
CGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGACATGCTGA
AGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACTCGCATCCC
GGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAGCAATCCTT
CGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCCCATTCAGT
CTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCAATCCCAAC
ATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAATTTGGGTCA
TCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAATCGCCACT
ACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGCAGAAGATG
CTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACGTTGTCCGA
CTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGAGATGCTGG
ATCTCGCCAAGAACTACAACAAGTCACTGGAGGACGAGGAGAAAATGACG
CCCGAGCAGCTGGCGATCAAGAACGTGGGCAAGCAGACCCCAAGCGGCAT
TTGGAGGAGAAGGTGGACAAGGTTATGCAGAACAATATTGTGCAGTGCCT
GGCGCCATGCTGGACACCATAGTCTTTAAGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAGTGGTCATATCATAATCTTATCATATTC
ATATCACAACTAGCTAGGAGATTCTGGTCATGACTATGCTGATTCTCACA
ATAAAACGCCCCGGCCGCACGACGTTCTGAACAATCGATTGGGATCTGAG
GTCATTACTGATTCTTA
UFO03784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn11-RA | 1208 | CG18174-RA | 171..1094 | 9..930 | 4570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5058786..5059550 | 773..9 | 3825 | 100 | Minus |
| 2L | 23513712 | 2L | 5058518..5058678 | 930..772 | 705 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:39 has no hits.
UFO03784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:51 Download gff for
UFO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn11-RA | 191..1127 | 1..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:26 Download gff for
UFO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn11-RA | 165..1101 | 1..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:27 Download gff for
UFO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn11-RA | 165..1101 | 1..939 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:27 Download gff for
UFO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5058511..5058676 | 774..939 | 96 | <- | Minus |
| 2L | 5058786..5059556 | 1..773 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:26 Download gff for
UFO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5058511..5058676 | 774..939 | 96 | <- | Minus |
| arm_2L | 5058786..5059556 | 1..773 | 99 | | Minus |
