UFO03788.5prime Sequence
1090 bp (875 high quality bases) assembled on 2009-02-04
> UFO03788.5prime
CAGTCGACATGCTCAAGTATCTGATCGTAGCTCTGGCCCTCTGTGCTGTG
GCCCATGCCGATGACTGGACGCCCAAGACTGGTGAGGAGATCAGGAAAAT
CCGCGTTGATTGCCTCAAGGAGAATCCGCTGAGCAACGACCAGATCTCCC
AGCTGAAGAACCTGATCTTCCCCAATGAGCCCGACGTGCGCCAGTACCTG
ACCTGCTCGGCCATCAAGCTGGGCATCTTCTGCGACCAACAGGGCTACCA
CGCCGACCGCCTGGCCAAGCAGTTCAAGATGGACCTGTCCGAGGAGGAGG
CCCTTCAGATCGCCCAGAGCTGCGTGGACGACAACGCGCAGAAGAATCCC
ACGGATGTGTGGGCCTTTCGCGGACACCAGTGCATGATGGCCAGTAAGAT
CGGCGACAAGGTCAGGGCCTTCGTGAAGGCCAAGGCGGAGGAGGCCAAAA
AGAAGGCCGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CGACTGAAGCATCACAACGGCTGTGACCTGATCGCAGCGCTCAGCACTTG
CGCTTGCGATATATTGCCATGTGAAACGGGGCGAGAGTGCATATGCACGT
TAATCAAATGTGACCACCAGGATGCTGAGCAAAACTATCTCATAACCTTA
GAATAGCAGTTCACGACCCCAATCTGGGATTATGTGAAACTGCGAATCGC
TGTTTCCTCAGGGAGAAACGTTCGTGTATGGAAGGGTACAGTGAACATCC
ATCACGTACGCTTCTGCTAGATCGAGACATCCAGCGCAAATGATAAGCGA
AATGGCTATTCTAGCTTAAGCGAATCGTGAGCGTTAGACT
UFO03788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp99c-RA | 580 | CG7584-RA | 62..514 | 9..461 | 2265 | 100 | Plus |
| Obp99c-RB | 566 | CG7584-RB | 88..500 | 49..461 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29685802..29686213 | 461..50 | 2060 | 100 | Minus |
| 3R | 32079331 | 3R | 29686681..29686723 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:22 has no hits.
UFO03788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:44 Download gff for
UFO03788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp99c-RA | 54..512 | 1..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:42 Download gff for
UFO03788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp99c-RA | 56..514 | 1..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:52 Download gff for
UFO03788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp99c-RA | 56..514 | 1..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:52 Download gff for
UFO03788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29685802..29686212 | 51..461 | 100 | <- | Minus |
| 3R | 29686682..29686729 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:42 Download gff for
UFO03788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25511524..25511934 | 51..461 | 100 | <- | Minus |
| arm_3R | 25512404..25512451 | 1..50 | 92 | | Minus |
