UFO03790.5prime Sequence
1083 bp (886 high quality bases) assembled on 2009-02-04
> UFO03790.5prime
CAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGCTAATCGCT
GCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTGCCCGAAGG
CTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCTGGTGGATG
CCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGGAATTTGGC
ATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATAGACGCCGG
CAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAAGGTGCACG
ACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATCTGGATAAG
CACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATGATTGGCGA
CTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGGACATGGAA
AGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCCTGATCGGC
GAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAGGACTACCG
GGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAATCTATTCA
ACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACGAAAACTGG
GAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGTTTCGGCAT
CATCTTCAGGGAGCTGTCCACAAACTGTCGAGAAGTGCCTTCGATATATA
TCTAAGTGCAGCTTCTAGACATCGTTGCGGCGGCCAGTAGTGTCTATCTA
TCTATCTATCTATCCATAGCTAGAACTGTCTGATATGTGATCCACATAAA
ACGCGCGCACACGTTACATCAGTGATCAGCTATGACACAAGATCAGAGCG
ATCATAGCCGCTGATCTCATATGTGATCTACTCGCATGACTCACGTGTAC
GATCCACGTCGCTGCCTGTAATGCTGGACGGCAAATGCATGCTACATGAC
CGTGGAAAATTCAACTGAGGTCGACCATGATGACGACGTCAGATTTCGAG
AGACCTCCGTCATCGTCGAAGAGTCGAGACATG
UFO03790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13618-RA | 1021 | CG13618-RA | 180..927 | 9..751 | 3615 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24527015..24527403 | 332..720 | 1945 | 100 | Plus |
| 3R | 32079331 | 3R | 24526750..24526901 | 183..334 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 24526599..24526689 | 94..184 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 24524973..24525057 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:23 has no hits.
UFO03790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:43 Download gff for
UFO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13618-RA | 174..929 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:05 Download gff for
UFO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13618-RA | 180..935 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:23 Download gff for
UFO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13618-RA | 180..935 | 9..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:23 Download gff for
UFO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24524973..24525057 | 9..93 | 100 | -> | Plus |
| 3R | 24526599..24526688 | 94..183 | 100 | -> | Plus |
| 3R | 24526751..24526901 | 184..334 | 100 | -> | Plus |
| 3R | 24527018..24527447 | 335..757 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:05 Download gff for
UFO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20352473..20352623 | 184..334 | 100 | -> | Plus |
| arm_3R | 20350695..20350779 | 9..93 | 100 | -> | Plus |
| arm_3R | 20352321..20352410 | 94..183 | 100 | -> | Plus |
| arm_3R | 20352740..20353169 | 335..757 | 98 | == | Plus |
