UFO03792.5prime Sequence
1110 bp (972 high quality bases) assembled on 2009-02-04
> UFO03792.5prime
CAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGAAGCGTACC
TTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTTCTGGACAT
GCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCGCAGGCGTT
TCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGAAGCTGCGC
AAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATTGTCAAGAC
CCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTCCATCATTG
GCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGCCCGAGATG
ATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCCGTCAAGCA
CGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCATTCCTCTGA
AGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAACTCACCCAGGG
ATTGGCTGAGACGAAAACATATTCTCATAACCCTTTAGGGATATAGCATG
TTTCAACGTAACACGCCACTTCTGCAATATATGTGTAAAACTGCCGAATC
GTCTGCATCACTTCAGAGCGATGAAACGTTTCAGTTGCTCATGAAACGTG
TACAGGTGAAACTATTGCATATCCACAGGTTCACTGCTTCCATGCAACAA
ATTCCGAATG
UFO03792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15-RA | 627 | CG8332-RA | 34..477 | 9..452 | 2220 | 100 | Plus |
| RpS15-RB | 726 | CG8332-RB | 226..660 | 18..452 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16570624..16570848 | 331..107 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 16570262..16570388 | 452..326 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 16570917..16571005 | 106..18 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:17 has no hits.
UFO03792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:41 Download gff for
UFO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RA | 41..489 | 9..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:16 Download gff for
UFO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RA | 34..482 | 9..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:30 Download gff for
UFO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RA | 34..482 | 9..458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:30 Download gff for
UFO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16570626..16570848 | 107..329 | 100 | <- | Minus |
| 2R | 16570917..16571005 | 18..106 | 100 | <- | Minus |
| 2R | 16570262..16570384 | 330..452 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:16 Download gff for
UFO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12457767..12457889 | 330..452 | 100 | <- | Minus |
| arm_2R | 12458131..12458353 | 107..329 | 100 | <- | Minus |
| arm_2R | 12458422..12458510 | 18..106 | 100 | <- | Minus |
