UFO03793.5prime Sequence
1117 bp (1027 high quality bases) assembled on 2009-02-04
> UFO03793.5prime
CAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCAAGTCGGCC
AAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGCGGTATCCT
GCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTACCGCCTGA
AGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCATCAAGAAG
GTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACGGTCTTCCT
GAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAAGAAGCGCC
CCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCCGCAACCTG
ACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAGGGCAAGCG
CGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGTCACCGGAC
CCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGCGCTACGTG
ATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTGCCCGAGCA
CCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGACAAGAAGA
CCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCGTGCCCAAC
GAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTGCTGAAGGT
CATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTTGCAGAACA
TGTTTGCCCTGCACTCCTCCCAATACCCCCACCGCATGCGATTCGCAAGC
TTTCTAGACCATTTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAATTCCAGATGGAGTTCTTGAGTCATTACTGATTTTTCAA
CAGGAGTCCAAGCGAGCTCGATTATCAAATTACGGCCCCGCCTGCCACTT
CATTCGCCAGTTACTGTTTGTATTTATTAAGCAATTCTTGCCGAACTTGA
GCCATTCAAACGCATGT
UFO03793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL6-RB | 967 | CG11522-RB | 47..832 | 9..794 | 3930 | 100 | Plus |
| RpL6-RA | 910 | CG11522-RA | 233..775 | 252..794 | 2715 | 100 | Plus |
| RpL6-RA | 910 | CG11522-RA | 47..238 | 9..200 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31594927..31595604 | 794..117 | 3390 | 100 | Minus |
| 3R | 32079331 | 3R | 31596048..31596158 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:31 has no hits.
UFO03793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:40 Download gff for
UFO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL6-RB | 84..878 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:00 Download gff for
UFO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL6-RB | 43..837 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:57 Download gff for
UFO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL6-RB | 43..837 | 1..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:57 Download gff for
UFO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31594922..31595601 | 120..800 | 99 | <- | Minus |
| 3R | 31596048..31596162 | 1..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:00 Download gff for
UFO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27420644..27421323 | 120..800 | 99 | <- | Minus |
| arm_3R | 27421770..27421884 | 1..119 | 96 | | Minus |
