UFO03794.5prime Sequence
1122 bp (1019 high quality bases) assembled on 2009-02-04
> UFO03794.5prime
CAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGCAATCCGAT
TCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGCTCCAGCCA
CCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCCCGTGGAGA
TAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCTGCGACTCG
GAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTGACACCAGA
TTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCTGCAGATTC
CGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCCCGGATGCC
ATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTGCTGGTCCA
CTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGCCTACTTGA
TGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGGTGCGGGAC
CGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAGCTGCTGTC
CTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTCGTGCAGCT
GCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTATGGCCACC
CATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATCGAGTTCGA
TCGCTGGACCCCGTCGGACACGGGTCTTAAAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGTCATTACTGATCTATCAACCAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCGCCAGTACTGT
TGTAATTCATTAAGCATTCTGCGGACTTGCAAGCCATTCACAAACGGCAT
GATGACCTGAATCGCAGCGCATCAGCACTGTTCCGCTGGCTATAATATTT
GCCATGTGAACCCGGGGCCAAG
UFO03794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkp3-RD | 4696 | CG14080-RD | 1214..1936 | 9..731 | 3615 | 100 | Plus |
| Mkp3-RC | 3119 | CG14080-RC | 1214..1936 | 9..731 | 3615 | 100 | Plus |
| Mkp3-RA | 2053 | CG14080-RA | 148..870 | 9..731 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19068915..19069284 | 731..362 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 19069682..19069891 | 227..18 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 19069487..19069624 | 363..226 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 98..133 | 110 | 81.1 | Plus |
UFO03794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:46 Download gff for
UFO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 142..870 | 1..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:11 Download gff for
UFO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 142..870 | 1..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:40 Download gff for
UFO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 142..870 | 1..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:40 Download gff for
UFO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19068915..19069282 | 364..731 | 100 | <- | Minus |
| 3L | 19069487..19069622 | 228..363 | 100 | <- | Minus |
| 3L | 19069682..19069891 | 18..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:11 Download gff for
UFO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19062015..19062382 | 364..731 | 100 | <- | Minus |
| arm_3L | 19062587..19062722 | 228..363 | 100 | <- | Minus |
| arm_3L | 19062782..19062991 | 18..227 | 100 | | Minus |
