UFO03801.5prime Sequence
982 bp (977 high quality bases) assembled on 2009-02-13
> UFO03801.5prime
CAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAAAGGGCAAG
ACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGGTATTCCTT
ACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCTGCGGCAAG
TGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAGCTGTGCAC
GTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACCGTTTCGGA
GTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTCCAGATATG
AGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCGCCCTTTCA
GCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACACAAATTAA
CAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCCCAAGAACT
TCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTGTTTTCGTC
CACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGAGCGGAAGC
TCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCAAGAATTTG
ACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGACATCTCGA
ATTTGCAAGGATAAGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCCACCGAGCGTTTCTGACAAATCCAGATGGAGTT
TCTGAGGTCATACTGGATCTATCAACAGAGTCAAGCGAGCTCGATATCAA
ATACGCCCCGGCCTGCCACTCATCGCAGTACTGTTGTATTTCATTAAGCA
TTCTGGCCGACATGAATCCATCAAAAACTGCC
UFO03801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mob3-RA | 912 | CG4946-RA | 185..844 | 9..668 | 3285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10265619..10265771 | 49..201 | 765 | 100 | Plus |
| 2L | 23513712 | 2L | 10265826..10265950 | 201..325 | 625 | 100 | Plus |
| 2L | 23513712 | 2L | 10266379..10266502 | 545..668 | 620 | 100 | Plus |
| 2L | 23513712 | 2L | 10266197..10266314 | 429..546 | 590 | 100 | Plus |
| 2L | 23513712 | 2L | 10266007..10266110 | 326..429 | 520 | 100 | Plus |
| 2L | 23513712 | 2L | 10265520..10265561 | 9..50 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:12 has no hits.
UFO03801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:16 Download gff for
UFO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob3-RA | 183..848 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:50 Download gff for
UFO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob3-RA | 185..850 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:17 Download gff for
UFO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob3-RA | 185..850 | 9..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:17 Download gff for
UFO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10265520..10265561 | 9..50 | 97 | -> | Plus |
| 2L | 10265621..10265771 | 51..201 | 100 | -> | Plus |
| 2L | 10265827..10265950 | 202..325 | 100 | -> | Plus |
| 2L | 10266007..10266110 | 326..429 | 100 | -> | Plus |
| 2L | 10266198..10266313 | 430..545 | 100 | -> | Plus |
| 2L | 10266380..10266508 | 546..673 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:50 Download gff for
UFO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10265520..10265561 | 9..50 | 97 | -> | Plus |
| arm_2L | 10265621..10265771 | 51..201 | 100 | -> | Plus |
| arm_2L | 10265827..10265950 | 202..325 | 100 | -> | Plus |
| arm_2L | 10266007..10266110 | 326..429 | 100 | -> | Plus |
| arm_2L | 10266198..10266313 | 430..545 | 100 | -> | Plus |
| arm_2L | 10266380..10266508 | 546..673 | 98 | == | Plus |
