UFO03802.5prime Sequence
1144 bp (1020 high quality bases) assembled on 2009-02-13
> UFO03802.5prime
CAGTCGACATGGGCAGTAAACTGTTTAACAAACTCTTGCTAATTGCCGGA
TTTGCCAGCCTGGCACATGCTGCTTTTTCTGCTGCCCATCATCGCACCTA
TTTGAGGCTGACGGAGCAGGAATGGAATAGCCTTCCATTGGACATTATCC
TGCAGACCGTCATCAGTTTGGTGATTGTGATTTACAACATCATCGAGATC
GTTGGCAACTTCAAGGAAATTCGCGCCACCGTGGACATGCAACAGAAAAC
TTGGGACACCTTGGGCAACTTCCCCTCGTTCTATTCCTTCAATCACCGTG
GTCGTGCCTTAAATCCTGGATATACGCCCCCGGAAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAAACTGGTGAAACTCACCCGGGGATTGGCTGAGACGAA
AAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGT
AACACGCCACATCTTGCGAATATTATGTGTAGAAACTGCCGGAAATCGTC
GTGGTTATTCCACTCCAGAGCGATGAAAACGTTTTCAGTTTGCTTCATGG
AAAACCGGTGTACCAGGGTGAACACTATCCCATATCACCAGCTCACCGTC
CTTTCATGCCATACGAAATTCCGGATGAGCATTCCTCAGGCGGACAAGAT
GGGTATAAAGCCGATAAACTGTGGCTTAATTTTCTTACGACTTAAAAGGC
CGTAATATCCAGCTGAACGTCTGGATTATGGTACTTGAGAGCCA
UFO03802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15168-RA | 492 | CG15168-RA | 83..409 | 9..335 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18988057..18988248 | 144..335 | 960 | 100 | Plus |
| 2L | 23513712 | 2L | 18987789..18987870 | 9..90 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 18987936..18987988 | 91..143 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:11 has no hits.
UFO03802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:15 Download gff for
UFO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15168-RA | 55..393 | 1..340 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:40 Download gff for
UFO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15168-RA | 75..413 | 1..340 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:01 Download gff for
UFO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15168-RA | 75..413 | 1..340 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:01 Download gff for
UFO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18987781..18987870 | 1..90 | 95 | -> | Plus |
| 2L | 18987936..18987988 | 91..143 | 100 | -> | Plus |
| 2L | 18988057..18988248 | 144..335 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:40 Download gff for
UFO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18987781..18987870 | 1..90 | 95 | -> | Plus |
| arm_2L | 18987936..18987988 | 91..143 | 100 | -> | Plus |
| arm_2L | 18988057..18988248 | 144..335 | 100 | == | Plus |
