UFO03808.5prime Sequence
1110 bp (988 high quality bases) assembled on 2009-02-13
> UFO03808.5prime
CAGTCGACATGGAGAAGCTAGCGTCGGCCAAAACGTGTCTTAAACTGCTG
CAGGTTATGCCCGGCGTGCAGCAGGCGGCCCTTCTTCCTGGTGGTGGCCT
GGGCGTGCTCGCTTCTCCTCTTCAGAATCTGATCCAGATGCAGCAGGTGC
GCCACCGACAAACCAAGCACTGGAAGCCCGAGTTCAAGCGCCTTCGTAAG
CTCAAGTTCGTAAAGATGGATCTGCCCAATCTGCGCGAGAAACAGGAGGA
TATCACCAAGGAGGAGATGCGCAGCCGGATGAAGGAGCGAGGTGTCTTGC
CGCCCCGTCCCTGGATGGAGCGCCCTTTCCACATAAGCTGCACGGGCGGC
ATCTTCGAGGCTTATGTCCCTCCTGAAGGCGACGGCAAGAAGTCGATCAT
TTCAACATCGGGTGCCAAGCAGAAGTTGGAGTTCCTGGAGAAGAAGTCCA
AGAGCCTGATGGCCGTGCGCAAGATTCGTTCCTACGACGAAAACTTCAGC
TCCGATGATTTCGGCGCCGAGGCCCAGGATATTTACATCCAGGCGCACAC
TCACATGGCTGCCAAGGACAAGTACAAGATCCGCGAGTTCGTCAGCGAAC
GCTGTTATCCGGAGATGATGCACAACGTCAAGGACAAGACCATTCGCTGG
AAGTTTCTACAGTCGCTGGAACCACCACGCGTTGTCCATGCCCGCGTGAC
GGAGGTGATCACCAAGGAAAACCAGTTCGCTCAAGTCACCGTGCGCTTCC
ACAGCCAACAGATGTTAGCCATCTACGACCGCTTCGGCCGCCTGATGCAC
GGCAGCGAGATCATCACCAAGGACGTGCTGGAATATGTGGTGTTTGAGAG
CACATTTCGAACGAGTATGGCAAATGGCGACTGCCCGACAGATCATCCCC
GACTGGGTTGCCCGCCCAGCAGCCCGCTTCCCATTACCTATCGTCTCATC
GAGGATGAGAGGAGCCACCCAAGGAACTGAGTGCCGGGGTATGCCGAGGT
GAACAGTGAACTACGTTGGCGACAATCCAGGAGCACTTGCCATTGGCAAC
CCCGGGTGGAGAGCATACCAGCCGTCCTGAGCCATGTGAAGCTTCTATGA
ACATTCTTTG
UFO03808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1268 | CG6949-RA | 79..1152 | 9..1077 | 4915 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22618679..22619631 | 51..1003 | 4435 | 99.1 | Plus |
| 3R | 32079331 | 3R | 22618570..22618616 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:44 has no hits.
UFO03808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:12 Download gff for
UFO03808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 88..1103 | 9..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:29 Download gff for
UFO03808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 108..1123 | 9..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:42 Download gff for
UFO03808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 79..1094 | 9..1022 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:42 Download gff for
UFO03808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618570..22618614 | 9..53 | 100 | -> | Plus |
| 3R | 22618682..22619652 | 54..1022 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:29 Download gff for
UFO03808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18444292..18444336 | 9..53 | 100 | -> | Plus |
| arm_3R | 18444404..18445374 | 54..1022 | 98 | | Plus |
