UFO03810.5prime Sequence
864 bp (864 high quality bases) assembled on 2009-02-13
> UFO03810.5prime
CAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGGTGAACGTC
AAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCCGAACTGAG
CGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCACCGTTTTGG
ATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTTCGATTCTC
ACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAATTCCTGCC
CGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTTGTACAACA
ATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTCGTTTGCGG
TACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAGAAGATTGT
GGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAAGAATACAG
TCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCGAACGTTTG
GCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCCAGTGCCAA
CGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTCGACGAAAC
CGAATAATAAGAAAGCCAAAGCTAAAAACTCGCCGGTGGGGGAGACAATG
AGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGATCAGGAGCA
ATCGCACTGGGGATCCAAATCCACTCAAAGAACAAATCAAAAAGAAAAAA
GAACTCGAAAGGCGATTCCTGGTTGAATCCACTGTCGAGAGCTGCCCTAT
CGTCGCTGGTCAGCTTCTGGGTTCTCTTTTACATCAACTTGTTATCATTA
CATGATCATGGTTC
UFO03810.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3408-RA | 1888 | CG3408-RA | 128..983 | 5..860 | 3980 | 98.3 | Plus |
| CG3408-RB | 1876 | CG3408-RB | 128..971 | 5..860 | 3790 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9507741..9508133 | 844..450 | 1635 | 96 | Minus |
| 3L | 28110227 | 3L | 9508218..9508486 | 451..183 | 1345 | 100 | Minus |
| 3L | 28110227 | 3L | 9509338..9509456 | 123..5 | 580 | 99.2 | Minus |
| 3L | 28110227 | 3L | 9508565..9508624 | 182..123 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:38 has no hits.
UFO03810.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:18 Download gff for
UFO03810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3408-RA | 122..983 | 1..864 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:02 Download gff for
UFO03810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3408-RA | 125..986 | 1..864 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:23 Download gff for
UFO03810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3408-RA | 125..986 | 1..864 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:23 Download gff for
UFO03810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9507720..9508133 | 450..864 | 96 | <- | Minus |
| 3L | 9508220..9508486 | 183..449 | 100 | <- | Minus |
| 3L | 9508565..9508624 | 123..182 | 100 | <- | Minus |
| 3L | 9509339..9509459 | 1..122 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:02 Download gff for
UFO03810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9500820..9501233 | 450..864 | 96 | <- | Minus |
| arm_3L | 9501320..9501586 | 183..449 | 100 | <- | Minus |
| arm_3L | 9501665..9501724 | 123..182 | 100 | <- | Minus |
| arm_3L | 9502439..9502559 | 1..122 | 97 | | Minus |
