UFO03813.5prime Sequence
940 bp (940 high quality bases) assembled on 2009-02-13
> UFO03813.5prime
CAGTCGACATGTCACACAACGTGGACGTGGAAAAGTGCTTAGAGGTGGCC
AGCAACCTGGTTTCCGAAGCCGGAAGGCTCATCGCTCGCAACAATGAGCA
GCGACAGGACTTCGTTTGCAAGAGCAATGACATCGACTTGGTGACCCAAA
CAGACAAGGATGTGGAGCAGCTGCTGATGGACGGCATTCGTCGCCACTTT
CCGGAGCACAAGTTCATCGGCGAGGAGGAGAGTAGCGGCGCGGAGGGTGT
CAAGAAGCTGACCGATGAGCCCACCTGGATCATTGATCCCGTGGACGGCA
CCATGAACTTTGTGCACGCCTTTCCGCACTCTTGCATCTCCGTGGGTCTG
AAGGTGAACAAGGTCACGGAGCTGGGCTTGGTCTACAATCCCATTCTAGA
GCAACGCTTTACTGCGAGACGAGGGCACGGAGCCTTCTACAACGGGCGCA
GGATCCACGTTAGCGGCCAGAAGGAACTGGGCAAAGCGCTGGTTACCAGT
GAATTCGGTACCACCCGGGACGAGGCCAAGATGAAGGTCGTGCATGAAAA
CTTCGAGAAGATGGCCAAAAAGGCGCATGGCCTACGGGTCCTGGGTTCGG
CAGCTCTCAATATGTCGATGGTTGCTTTGGGAGCCGCCGACGCTAACTAT
GAATTTGGAATTCACGCCTGGGATGTGTGTGCCGGCGACTTGATTGTCCG
GGAGGCCCGGAGGCGTGGTCATCGATCCTGCTGGCGGCGAATTCGACATC
ATGTCTCGAAAGGGTCCTGGCGGCAGCCCACACCAGAGTTTGCCCAAGAG
ATCTCCAAAGTGCTACCGCAGTTTATCCCCTTTCCTCGCGATGATGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCAGTAAGTGGTCATATCATA
ATCATAATCATAATCATAATCACACTAGCCTAGGAGATCC
UFO03813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9391-RC | 1171 | CG9391-RC | 174..1007 | 9..845 | 4020 | 99 | Plus |
| CG9391-RA | 1104 | CG9391-RA | 107..940 | 9..845 | 4020 | 99 | Plus |
| CG9389-RA | 2043 | CG9389-RA | 1214..1301 | 258..345 | 260 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21267167..21267535 | 580..212 | 1845 | 100 | Minus |
| 3L | 28110227 | 3L | 21266844..21267106 | 845..580 | 1090 | 96.6 | Minus |
| 3L | 28110227 | 3L | 21267585..21267721 | 213..77 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 21267791..21267859 | 77..9 | 345 | 100 | Minus |
| 3L | 28110227 | 3L | 21269202..21269289 | 345..258 | 260 | 86.4 | Minus |
| 3L | 28110227 | 3L | 15977335..15977429 | 256..350 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:07 has no hits.
UFO03813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:55 Download gff for
UFO03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9391-RA | 75..921 | 1..850 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:23 Download gff for
UFO03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9391-RA | 98..944 | 1..850 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:06 Download gff for
UFO03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9391-RA | 98..944 | 1..850 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:06 Download gff for
UFO03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21267167..21267535 | 212..580 | 100 | <- | Minus |
| 3L | 21267587..21267720 | 78..211 | 100 | <- | Minus |
| 3L | 21267791..21267866 | 1..77 | 94 | | Minus |
| 3L | 21266844..21267105 | 581..845 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:23 Download gff for
UFO03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21259944..21260205 | 581..845 | 96 | <- | Minus |
| arm_3L | 21260267..21260635 | 212..580 | 100 | <- | Minus |
| arm_3L | 21260687..21260820 | 78..211 | 100 | <- | Minus |
| arm_3L | 21260891..21260966 | 1..77 | 94 | | Minus |
