UFO03819.5prime Sequence
1103 bp (986 high quality bases) assembled on 2009-02-13
> UFO03819.5prime
CAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGGCCAAGTCC
TGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGAATTTTGTG
GCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTCCGCCCTGG
CCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCCTGCGACAG
CAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTGGCGGCGGA
GCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTGCTCGGAAG
CTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCTTGTTCGCC
TCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATCGTCATCTC
GTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCTGTGCCTGG
CAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCTGGAACAAG
AAGAATCCCGACGAGAGCGAGTGCTGTCCTGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGATAATATTT
GCCCATGGTGAAACGGGGGCGAAGAAGTTGTCATATTGGCCACGTTTAAA
TCAAACTGGTGAAACTCACCCAGGATTGGGCTGAGACCAAAACCTATTCC
TCATATCCCTTTAGGAATAGGCCAGGGTTCCCGTAACGCCACATCTGGCA
ATATGGTTAGAACTGCCGGAAATCGTTGCATCCCTCCCGACGATAGTATA
CCT
UFO03819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctr1B-RA | 953 | CG7459-RA | 126..647 | 9..530 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8318437..8318899 | 68..530 | 2315 | 100 | Plus |
| 3R | 32079331 | 3R | 8317737..8317796 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:14 has no hits.
UFO03819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:53 Download gff for
UFO03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1B-RA | 111..641 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:43 Download gff for
UFO03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1B-RA | 117..647 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:56 Download gff for
UFO03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1B-RA | 117..647 | 1..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:56 Download gff for
UFO03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8317728..8317796 | 1..68 | 94 | -> | Plus |
| 3R | 8318438..8318899 | 69..530 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:43 Download gff for
UFO03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4143450..4143518 | 1..68 | 94 | -> | Plus |
| arm_3R | 4144160..4144621 | 69..530 | 100 | == | Plus |
